Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68830 296 / 1e-98 STN7 STT7 homolog STN7 (.1) AT5G01920 131 / 5e-36 STN8 State transition 8, Protein kinase superfamily protein (.1) AT1G13350 51 / 1e-07 Protein kinase superfamily protein (.1.2) AT1G50240 49 / 1e-06 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT3G17750 48 / 2e-06 Protein kinase superfamily protein (.1) AT3G53640 47 / 2e-06 Protein kinase superfamily protein (.1) AT2G23080 47 / 4e-06 CKA3 casein kinase II, alpha chain 3, Protein kinase superfamily protein (.1.2) AT2G23070 46 / 5e-06 Protein kinase superfamily protein (.1) AT1G73460 46 / 6e-06 Protein kinase superfamily protein (.1) AT5G67380 46 / 6e-06 ATCKA1, CKA1 casein kinase alpha 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G116800 [exp] 300 / 3e-100 AT1G68830 883 / 0.0 STT7 homolog STN7 (.1) Potri.016G138500 [exp] 129 / 3e-35 AT5G01920 596 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Potri.006G109700 [exp] 127 / 2e-34 AT5G01920 597 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Potri.008G166500 [exp] 53 / 2e-08 AT1G08650 287 / 2e-97 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.012G039700 [exp] 49 / 5e-07 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1) Potri.001G278600 [exp] 49 / 6e-07 AT1G07150 353 / 2e-117 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.010G071400 [exp] 49 / 6e-07 AT1G08650 298 / 1e-101 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.015G033400 [exp] 49 / 6e-07 AT1G73460 1356 / 0.0 Protein kinase superfamily protein (.1) Potri.013G046100 [exp] 47 / 2e-06 AT3G04530 366 / 1e-128 phosphoenolpyruvate carboxylase kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034273 [exp] 285 / 2e-94 AT1G68830 832 / 0.0 STT7 homolog STN7 (.1) Lus10041490 [exp] 172 / 4e-51 AT1G68830 754 / 0.0 STT7 homolog STN7 (.1) Lus10014183 [exp] 127 / 1e-34 AT5G01920 651 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Lus10022730 [exp] 103 / 8e-26 AT5G01920 530 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Lus10034288 [exp] 50 / 2e-07 AT3G50310 181 / 5e-55 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10019296 [exp] 48 / 1e-06 AT2G23070 631 / 0.0 Protein kinase superfamily protein (.1) Lus10011526 [exp] 48 / 2e-06 AT2G23070 632 / 0.0 Protein kinase superfamily protein (.1) Lus10031328 [exp] 47 / 2e-06 AT1G73450 405 / 6e-135 Protein kinase superfamily protein (.1) Lus10032849 [exp] 47 / 3e-06 AT5G67380 563 / 0.0 casein kinase alpha 1 (.1.2) Lus10030868 [exp] 47 / 3e-06 AT3G01490 253 / 3e-81 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.010G129532.1 pacid=42796903 polypeptide=Potri.010G129532.1.p locus=Potri.010G129532 ID=Potri.010G129532.1.v4.1 annot-version=v4.1 ATGCAGAGTAAAGAGTTCCCCTATAATGTAGAAACAATGATACTAGGAGAGGCTCAGGACTTGCCTAAGGGGCTGGAGAGGGATAACAGAATCATTCAAA CTATCATGACACAACTTTTATTTGCGTTGGATGGTCTTCACTCAACAGGAATTGTGCATGGGGATATTAAACCGCAGAACATTATTTTTTCTGAAGGGTC TCGTACATTTAAGATCATTGATCTTGGAGCTGCAGCGGATTTGCGAGCGGGAATCAATTATATTCCAAAAGAATTTCTTTTGGACCCGAGATACGCTGTA CCAGAGCAATACATCATGAGCACACAAACTCCATCCGCACCCTCAGCTCCAGTGGCAACTGCACTTTCCCCAGTTCTTTGGCAGGCTTTTCCTGGACTAC GTTCTGATAGTGGGCTCATACAGTTCAACCGTCATTTAAAACGATGTGATTATGACCTAATTGCATGGAGGAAAAGCGTAGAGACACGTGCCAGCTCTGA TCTTCGAAGGGGTTTTGAGTTATTGGATTTAGATGGTGGGATAGGATGGGAACTTCTTAACTTTGATGGTCCGATATAA
AA sequence Show only first row Show all	>Potri.010G129532.1 pacid=42796903 polypeptide=Potri.010G129532.1.p locus=Potri.010G129532 ID=Potri.010G129532.1.v4.1 annot-version=v4.1 MQSKEFPYNVETMILGEAQDLPKGLERDNRIIQTIMTQLLFALDGLHSTGIVHGDIKPQNIIFSEGSRTFKIIDLGAAADLRAGINYIPKEFLLDPRYAV PEQYIMSTQTPSAPSAPVATALSPVLWQAFPGLRSDSGLIQFNRHLKRCDYDLIAWRKSVETRASSDLRRGFELLDLDGGIGWELLNFDGPI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68830		STN7	STT7 homolog STN7 (.1)		Potri.010G129532 [exp]	0	1
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Potri.014G133400 [exp]	5.47	0.8726	APG3.1
AT1G03160		FZL	FZO-like (.1.2)		Potri.005G209200 [exp]	6.16	0.9108
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Potri.009G032000 [exp]	11.18	0.8526
					Potri.018G145600 [exp]	14.96	0.8795
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Potri.014G126700 [exp]	15.03	0.9059	RSH1.2
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.001G090800 [exp]	16.49	0.8786
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Potri.014G170300 [exp]	24.81	0.8687
AT5G51690		ACS12	1-amino-cyclopropane-1-carboxy...		Potri.015G132100 [exp]	25.09	0.8854
AT5G62620			Galactosyltransferase family p...		Potri.012G072400 [exp]	25.92	0.8675
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Potri.001G351800 [exp]	26.87	0.8634

Compare expression of checked genes

Potri.010G129532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.