Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75290 240 / 3e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G75280 236 / 1e-75 NmrA-like negative transcriptional regulator family protein (.1) AT4G39230 232 / 3e-74 NmrA-like negative transcriptional regulator family protein (.1) AT1G75300 225 / 2e-71 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 213 / 7e-67 NmrA-like negative transcriptional regulator family protein (.1) AT1G32100 210 / 1e-65 ATPRR1 pinoresinol reductase 1 (.1) AT1G19540 207 / 2e-64 NmrA-like negative transcriptional regulator family protein (.1) AT4G13660 189 / 2e-57 ATPRR2 pinoresinol reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G116500 [exp] 625 / 0 AT1G75290 242 / 3e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G050200 [exp] 448 / 1e-158 AT1G75290 257 / 6e-84 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G118100 [exp] 238 / 2e-76 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 233 / 1e-74 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 232 / 3e-74 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 231 / 1e-73 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 223 / 1e-70 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 221 / 2e-69 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.001G133200 [exp] 213 / 1e-66 AT1G32100 410 / 6e-145 pinoresinol reductase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035058 [exp] 424 / 4e-149 AT1G75290 212 / 2e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032470 [exp] 396 / 2e-137 AT1G75290 226 / 2e-71 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042311 [exp] 251 / 1e-81 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 249 / 7e-81 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 249 / 8e-81 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 249 / 7e-79 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10026350 [exp] 234 / 7e-75 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 234 / 7e-75 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10023558 [exp] 208 / 8e-65 AT4G34540 405 / 7e-143 NmrA-like negative transcriptional regulator family protein (.1) Lus10012143 [exp] 203 / 7e-63 AT1G32100 447 / 1e-159 pinoresinol reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.010G129800.6 pacid=42798648 polypeptide=Potri.010G129800.6.p locus=Potri.010G129800 ID=Potri.010G129800.6.v4.1 annot-version=v4.1 ATGACTGTTTCAGCAGCTTCCCCTCCAATCAAGAGTCGAGTCCTCATTGCCGGAGCAACCGGTTTTATCGGTCAATTCGTGGCCGAAGCCAGCTTAGACT CCGATCGACCAACCTATGTTCTTGTCCGGCCAGGTGTTGCTACATGCCCTTCTAAGGCCGAAGTTCTCAAATCTCTTCATGACAAAGGAGCCATCATCTT GCAGGGGCTGATTAGTGACAGGAAATACATGGAGAAAATACTTAAAGTTCACGAGATTGATGTTGTAATATCAGCAGTAGGAGGGGGGAATGTACTGGAC CAACTTGCCCTGGTAGAAGCTATCAAGGCCGTCGGCACCATCAAGAGATTTTTGCCATCAGAATTTGGGCATGATGTGGTGAGGGCTGATCCAGTGGAGC CAGGGCTGCAAATGTACAAAGAGAAACGTGAAATTAGACGGTTGGTCGAGGAGTATGGCATTCCCTACACCTATATCTGTTGCAATTCAATTGCTTCTTG GCCTTACTATGATAACAAACACCCTGCTCATGCTCTGCCTCCTTTGGAACACTTCAAGATCTACGGAGATGGCACCGTTAAAGCTTACTTTGTTGCTGGC ACTGATATTGGGAAATTTACAATGAAAACTGTGGATGATGTGAGAACTATCAACAAGTCAGTCCATTTTCGACCTTCCAACAATTTCTATAACATGAATG AGCTTGCTTCTTTGTGGGAAAAGAAAATTGGAAGAACCCTCCCTCGAGTTACAGTCACTGAACATGACCTCCTTGCTATTGCTGCAGAGAATATCATACC AGAAAGTGTAGTTGCATCATTCACACACGATATATTCATCAAGGGTTGTCAGTTTAATTTTTCAATCAATGGCCTTGATGATGTTGAAGTGGGCACTCTA TATCCCGATGAACCTTTCCGTACCTTGGATGAATGTTTCAATGATTTTGCTCTCAAATTGAAGGACAGTAATAAGGATGTAGGCAGCAATGGAAATGCTA CTCCAAATCATGTGATTGAATCGCTGGCTATATCAGAACCCCGTGTTTGTTTGTGTGACGAAAAGATCAGTCTTTTTGCTGGAATATAG
AA sequence Show only first row Show all	>Potri.010G129800.6 pacid=42798648 polypeptide=Potri.010G129800.6.p locus=Potri.010G129800 ID=Potri.010G129800.6.v4.1 annot-version=v4.1 MTVSAASPPIKSRVLIAGATGFIGQFVAEASLDSDRPTYVLVRPGVATCPSKAEVLKSLHDKGAIILQGLISDRKYMEKILKVHEIDVVISAVGGGNVLD QLALVEAIKAVGTIKRFLPSEFGHDVVRADPVEPGLQMYKEKREIRRLVEEYGIPYTYICCNSIASWPYYDNKHPAHALPPLEHFKIYGDGTVKAYFVAG TDIGKFTMKTVDDVRTINKSVHFRPSNNFYNMNELASLWEKKIGRTLPRVTVTEHDLLAIAAENIIPESVVASFTHDIFIKGCQFNFSINGLDDVEVGTL YPDEPFRTLDECFNDFALKLKDSNKDVGSNGNATPNHVIESLAISEPRVCLCDEKISLFAGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75290			NAD(P)-binding Rossmann-fold s...		Potri.010G129800 [exp]	0	1
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Potri.005G229500 [exp]	3.46	0.8647	Pt-DFR.1
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.001G051500 [exp]	3.74	0.8650	Pt-CHS.6,CHS2
AT1G75290			NAD(P)-binding Rossmann-fold s...		Potri.015G050200 [exp]	8.12	0.8516
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.003G176900 [exp]	8.71	0.8392	CHS6,Pt-CHS.4
AT4G22880		TT18, TDS4, ANS...	TANNIN DEFICIENT SEED 4, ANTHO...		Potri.001G113100 [exp]	9.74	0.8370	Pt-ANS.1
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.014G145100 [exp]	14.42	0.8138	Pt-CHS.7
AT2G23910			NAD(P)-binding Rossmann-fold s...		Potri.001G140700 [exp]	15.90	0.8074
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.001G051600 [exp]	16.73	0.8156	Pt-CHS.2,CHS3
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Potri.002G059200 [exp]	17.74	0.8122
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.006G209000 [exp]	19.07	0.7943

Compare expression of checked genes

Potri.010G129800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.