Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49000 77 / 2e-18 unknown protein AT3G18560 72 / 5e-16 unknown protein AT1G71740 51 / 1e-08 unknown protein AT3G14760 47 / 6e-07 unknown protein AT5G27020 42 / 5e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G059500 [exp] 115 / 3e-33 AT1G49000 111 / 1e-31 unknown protein Potri.004G088300 [exp] 55 / 7e-10 AT1G49000 50 / 4e-08 unknown protein Potri.011G103500 [exp] 50 / 5e-08 AT3G14760 121 / 6e-35 unknown protein Potri.005G198200 [exp] 49 / 9e-08 AT1G71740 112 / 5e-33 unknown protein Potri.017G128700 [exp] 48 / 2e-07 AT3G18560 48 / 3e-07 unknown protein Potri.001G382800 [exp] 45 / 4e-06 AT3G14760 109 / 3e-30 unknown protein Potri.006G226200 [exp] 44 / 1e-05 ND / Potri.013G011950 [exp] 43 / 4e-05 AT5G27020 55 / 5e-09 unknown protein Potri.005G021500 [exp] 40 / 0.0002 AT5G27020 55 / 2e-09 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034266 [exp] 92 / 8e-24 AT1G71740 53 / 4e-09 unknown protein Lus10041497 [exp] 88 / 4e-22 AT1G71740 51 / 2e-08 unknown protein Lus10032453 [exp] 71 / 3e-15 AT1G49000 70 / 1e-14 unknown protein Lus10042953 [exp] 71 / 5e-15 AT1G49000 67 / 8e-14 unknown protein Lus10042773 [exp] 53 / 3e-09 AT1G71740 81 / 8e-21 unknown protein Lus10029742 [exp] 50 / 4e-08 AT1G71740 82 / 5e-21 unknown protein Lus10038145 [exp] 43 / 5e-05 AT3G14760 70 / 1e-14 unknown protein Lus10042496 [exp] 40 / 0.0004 AT3G14760 65 / 1e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G130600.1 pacid=42797915 polypeptide=Potri.010G130600.1.p locus=Potri.010G130600 ID=Potri.010G130600.1.v4.1 annot-version=v4.1 ATGGTACGTGTACTCATGGTTGATCATGTCGGTCATCACATAGAAGGGTCCGTCCCACTTGCAATTGGCTTGTTTATCTCAGTTTCTGTTCTTGTGGCAC TATGTGCCAAACATAGCATATGGCGCACCCAGCAGAAGCATCAGTACTCATGCGCTGCAACAAGCAATTCCAAATGTCCAACACCTAATAAATCACCATC AGCATCGCCTAAGAAACTCTGGCCAAAAATTAGTAACAAGGCAATTCCATTCATGGACAGGAAAAAAGATGGTGCTGATGATGAAGACGCTAAGGTACCC GAAACTGAAATTAAAGAGGAAGCTGGGGGATATGAAGAAGATGGGCTGTGGCAAAAATCAATCTTGATGGGAGAGAAATGTCAGCCACCGGAATTTTCAG GTGTGATATTCTATGATGGTCGTGGGAATCAATTGCCTCAGATGCCAAGGTCACCTAGGGCCAGTCCCTTGCCAAGTATTTCATTTCGGGCTGTCAAAGA TGCCAATTAG
AA sequence Show only first row Show all	>Potri.010G130600.1 pacid=42797915 polypeptide=Potri.010G130600.1.p locus=Potri.010G130600 ID=Potri.010G130600.1.v4.1 annot-version=v4.1 MVRVLMVDHVGHHIEGSVPLAIGLFISVSVLVALCAKHSIWRTQQKHQYSCAATSNSKCPTPNKSPSASPKKLWPKISNKAIPFMDRKKDGADDEDAKVP ETEIKEEAGGYEEDGLWQKSILMGEKCQPPEFSGVIFYDGRGNQLPQMPRSPRASPLPSISFRAVKDAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49000			unknown protein		Potri.010G130600 [exp]	0	1
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.001G280000 [exp]	1.41	0.9833
AT2G23770			protein kinase family protein ...		Potri.005G128300 [exp]	3.16	0.9777
AT3G22060			Receptor-like protein kinase-r...		Potri.011G030800 [exp]	3.46	0.9747
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G138401 [exp]	3.87	0.9776
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Potri.006G058800 [exp]	4.89	0.9628
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Potri.006G089600 [exp]	5.91	0.9724	RBE.2
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G191400 [exp]	6.92	0.9730
AT1G49570			Peroxidase superfamily protein...		Potri.009G106400 [exp]	7.21	0.9679
AT1G61590			Protein kinase superfamily pro...		Potri.001G128500 [exp]	7.34	0.9691
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447500 [exp]	8.66	0.9674

Compare expression of checked genes

Potri.010G130600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.