Plant FIBer expression Database

Potri.010G130700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G26090 460 / 3e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G115401
[exp]
261 / 5e-86 AT1G26090 145 / 1e-41 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Potri.008G115467
[exp]
86 / 2e-20 AT1G26090 0 / 1 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034381
[exp]
505 / 1e-177 AT1G26090 509 / 4e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Lus10034265
[exp]
260 / 4e-85 AT1G26090 233 / 1e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF02374 ArsA_ATPase Anion-transporting ATPase
Representative CDS sequence
>Potri.010G130700.1 pacid=42797377 polypeptide=Potri.010G130700.1.p locus=Potri.010G130700 ID=Potri.010G130700.1.v4.1 annot-version=v4.1
ATGGCTACTTTTTCTTCCTCACCTTTGCTATTTGCAAACCCAGATTCTGGTTTCTCTCTTTTAGAACGAACTTGTAAAATCAAGATGCTTAGAAGAACAA
CAGCTACTCCTCCATCCATTACTGCTGCTTCTTTGAATGATAATGATGATCAAAGTTCTTCATCAAAGTTGGTCACTTTTATAGGCAAAGGTGGCTCTGG
AAAGACTACCTCTGCAATTTTCGCTGCCCAGCATTATGCAATGTCTGGGCTTCGGACATGCTTGGTGATACAGACCCAAGATCCCTCTGCTGAATATCTA
CTGAACTATAAGATTGGAACTTCTCCTACCGAGTGCAGTGACAACCTTTGGGCTGTTAGGTTGGAAACCAGTAAAATGCTTCTTGAGCCTCTTGATCGGC
TGAAGCAAGCCGATTCTCGTCTTAAGATGACTCAAGGAGTTCTCGAAGGGGTGGTTGGAGAAGAGCTTGGTGTGCTTCCTGCAATGGATTCTATTTTTGC
AGTATATGCACTTGCAGGGCTTGTAGGATCATTAAATGTTAACCAGACCAACAGAGATAAATTTGACATAATAGTATATGATGGAGTCAGCACTGATGAA
ACACTTCGAGTGATAGGAGCAGCTAGTAAAGCAAGATTGTATTTGAAATATCTGAGGAATTTGGCCGAGAAGACTGATCTTGGGAGATTGGCTGGTCCTT
CACTCGTGAGCCTTGTTGATGAAGCATTGAGTTTAAGTGGTAGCAAATATAATTTGAACAGGAAAACGAGTGCTGAAATATGGGACAGTTTGGAAACAAT
GTTAATGCAAGGATCTTCTGCTTTTTATGAACCATCTAGATTTGGATGCTATCTTGTGATGGACCCTAACATTCCAACATCAGTGAATGCTGCTTTGCGT
TATTGGGGCTGTACCCTCCAAGCTGGTGCGCAAGTTTCTGGTGCAATTGGAATTTCTTCACCACGTTTCAATGAAGAATCATTGGAAGGAGTCAAGAAAA
ACTTTTTGCCCTTGCCTTTTGCTTTCATTCCACATCTCTCAATAGGTTACCCTCCTGAATGGAATTCAGTCATGCTAAACACTGTTGGTCATGATGCAAG
AACTTTATTTTCCTTGCCAGCAAGTCACAGCAATAGCATGGCACCACCAGTAAAGTTTGACGCAGCTGAAAAATCAGTTACTCTTTTCATGCCAGGTTTT
GACAAGTCAGAGATCAAGCTATACCAATATAGAGGAGGATCTGAATTGTTGGTTGAAGCAGGGGACCAGAGACGTGTAATCTGTCTCCCAACAAAAATTC
AAGGTAAGGTGGGAGGTGCAAAGTTCTTTGACAGAAGTCTTGTAATCACAATGCGATAG
AA sequence
>Potri.010G130700.1 pacid=42797377 polypeptide=Potri.010G130700.1.p locus=Potri.010G130700 ID=Potri.010G130700.1.v4.1 annot-version=v4.1
MATFSSSPLLFANPDSGFSLLERTCKIKMLRRTTATPPSITAASLNDNDDQSSSSKLVTFIGKGGSGKTTSAIFAAQHYAMSGLRTCLVIQTQDPSAEYL
LNYKIGTSPTECSDNLWAVRLETSKMLLEPLDRLKQADSRLKMTQGVLEGVVGEELGVLPAMDSIFAVYALAGLVGSLNVNQTNRDKFDIIVYDGVSTDE
TLRVIGAASKARLYLKYLRNLAEKTDLGRLAGPSLVSLVDEALSLSGSKYNLNRKTSAEIWDSLETMLMQGSSAFYEPSRFGCYLVMDPNIPTSVNAALR
YWGCTLQAGAQVSGAIGISSPRFNEESLEGVKKNFLPLPFAFIPHLSIGYPPEWNSVMLNTVGHDARTLFSLPASHSNSMAPPVKFDAAEKSVTLFMPGF
DKSEIKLYQYRGGSELLVEAGDQRRVICLPTKIQGKVGGAKFFDRSLVITMR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G26090 P-loop containing nucleoside t... Potri.010G130700
[exp]
0 1
AT2G44900 ARABIDILLO-1, A... F-box Armadillo protein 1, ARA... Potri.002G137100
[exp]
9.32 0.7891
AT2G01930 BBR_BPC BPC1, BBR/BPC1,... basic pentacysteine1 (.1.2) Potri.015G033000
[exp]
9.48 0.7511
Potri.016G125901
[exp]
13.74 0.7583
AT4G23740 Leucine-rich repeat protein ki... Potri.012G033200
[exp]
15.39 0.7104
AT5G61450 P-loop containing nucleoside t... Potri.001G125700
[exp]
22.80 0.7582
AT1G02145 EBS4, ALG12 EMS-MUTAGENIZED BRI1\(BRASSINO... Potri.002G139200
[exp]
36.53 0.7540
AT3G14470 NB-ARC domain-containing disea... Potri.017G015300
[exp]
38.96 0.7661
AT1G71820 SEC6 SEC6 (.1.2) Potri.019G088100
[exp]
43.41 0.7569
Potri.013G034600
[exp]
43.81 0.7402
AT1G27520 Glycosyl hydrolase family 47 p... Potri.015G071400
[exp]
45.57 0.7404

Potri.010G130700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.