Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25680 503 / 2e-173 unknown protein AT5G23890 228 / 9e-65 unknown protein AT5G52410 209 / 5e-59 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G145700 [exp] 229 / 6e-65 AT5G23890 709 / 0.0 unknown protein Potri.012G142500 [exp] 213 / 2e-59 AT5G23890 650 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021714 [exp] 537 / 0 AT3G25680 456 / 1e-153 unknown protein Lus10035054 [exp] 536 / 0 AT3G25680 472 / 2e-161 unknown protein Lus10038854 [exp] 228 / 1e-64 AT5G52410 709 / 0.0 unknown protein Lus10014972 [exp] 217 / 9e-61 AT5G23890 700 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G131000.1 pacid=42799566 polypeptide=Potri.010G131000.1.p locus=Potri.010G131000 ID=Potri.010G131000.1.v4.1 annot-version=v4.1 ATGTTCTATTCTACTGCTACTGCTACTGCTACGGGCGCTCCTTCCTCTCTCTTCCTCCGCACAGCCGTCACTCCGTCACTCCTACTCCTACGACGCCGTA ATCTTTCAGTTCTGAGATCCGAAAACCCTAACAAACACCTCCGCCTCTCCGCTTCACTCACCGACACGCACCCCCACTTCTCCTGGTCCTCTCCTCCACC TCCAACTGACGATGACCATTTCAGAGGCTGGGCCTTTCCCGAATCCCCTCCACAAAGCAACAACAACAAGAAAGGGTTGCCGAAAATTGTAATTATTGCT GGGATTGGGACCTGTGTTACTGCTCTGTTAGCTGCCATTGCATATTTCTTGCTCTCTAGAAAAGGATTCGAGTTCCGATTTCATAGTCCAAGTTCAACTG AGACCACCGTATATGATAAAATTGAAACTAATATGTCTGACGAAAATGCTGCTGCTGCGTCTGACGCAGCCATGGAGGGTGTATCTGATGCCACCGGCAT AACTCTCCATAAGGAACCTGCAGAGAAGCTTGAACGTGTGAAAGTGTCGGTTTATGTGGATTCTAACCAACTGGAAACTCTATTGGCGTTAAAGAAACTG AAGATCATTGAAGATGATGTAGCGGCTGATGAATTATGCACTAGGAGGGAATATGCAAGATGGTTACTCCGTCTAAATTCAATGTTGGAAAGGAATCAGA AGCATAGAATTGTTCCATCCATATCACTTTCTGGTTCAGTAATAGCTGCATTTGATGATTTGGGCGTTGAAGATCCAGATTTTGAATCCATCCAAGCCCT TGCTGAGTCTGGCATCATACCCAGCAAGCTATCAGGGACGAATTCCTGTGCTGACAGTTCTGATGGTAGAAGCTTCTGCTTTTACCCCGAGAGGTTTATT TCTCGGCAGGATCTGATCAACTGGAAAGCTCAATTAGAGTATGGTTTTTTACCAGGAATAACAGAACAGATGTCAAAGACTAAAGTATATTATATGGATG TAAAGGAGATAAGCTCAGATGCAACACCTGAACTTCTTACTGACATGTTGGCCGGGGACAAGAGCATCATCAGAAAAGTTTTTGGACAGAGCAGGCGGTT TCAACCAAATAAACCTTTAACAAAGGCACAAGCAGCAGTTGCTCTGATAAGTGGCAGGATGTCTGAAGCAGTTTACAATGAAATATTGAGGCTGGAAGCA GAGAAGTCTTTAAGGCAAGCTACAGTGAAAGAAATTAGGAATGAATTTCTTGAGAGAGGAGATATAAAAAGGTTTTGGGATGAGAAGATGAATGAAGAAA AAATCCGAGGTTTTGAGGTTGAGAAGCTTTATATTGCCGCTTTACATGATTTGGAAGAGGAGAAAATTGTACAGGTGAAAACTTACGAAGAGTATTTGAA GGAGAAGGCAGCTATGGATTGTCAGAGGCAACTGCTGCTCCATCTGAAGGAAGAGGTTGATGAGATGTCAGAAAGGCTTGCATCTGAGAGGTCTGTGTAT GCAGCTGAGCAGTGTAATCTGCAGGAATTGCTTAGTAAATTACAGTTTAAGCAGGAAGTGATGCTTGATACAAAATCTATACTGGAAGCTGAAATTGAAG CTCTTCGAATCCTCAGATCTTGGGTAGAAGATGAGGCAAGGAAAAGCCAAGCCCGAGCTAGAGTTCTGGAGGAGGTTGGACGAAGGTGGAAATGGGACAA TCAAGCCTGA
AA sequence Show only first row Show all	>Potri.010G131000.1 pacid=42799566 polypeptide=Potri.010G131000.1.p locus=Potri.010G131000 ID=Potri.010G131000.1.v4.1 annot-version=v4.1 MFYSTATATATGAPSSLFLRTAVTPSLLLLRRRNLSVLRSENPNKHLRLSASLTDTHPHFSWSSPPPPTDDDHFRGWAFPESPPQSNNNKKGLPKIVIIA GIGTCVTALLAAIAYFLLSRKGFEFRFHSPSSTETTVYDKIETNMSDENAAAASDAAMEGVSDATGITLHKEPAEKLERVKVSVYVDSNQLETLLALKKL KIIEDDVAADELCTRREYARWLLRLNSMLERNQKHRIVPSISLSGSVIAAFDDLGVEDPDFESIQALAESGIIPSKLSGTNSCADSSDGRSFCFYPERFI SRQDLINWKAQLEYGFLPGITEQMSKTKVYYMDVKEISSDATPELLTDMLAGDKSIIRKVFGQSRRFQPNKPLTKAQAAVALISGRMSEAVYNEILRLEA EKSLRQATVKEIRNEFLERGDIKRFWDEKMNEEKIRGFEVEKLYIAALHDLEEEKIVQVKTYEEYLKEKAAMDCQRQLLLHLKEEVDEMSERLASERSVY AAEQCNLQELLSKLQFKQEVMLDTKSILEAEIEALRILRSWVEDEARKSQARARVLEEVGRRWKWDNQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25680			unknown protein		Potri.010G131000 [exp]	0	1
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Potri.001G160700 [exp]	4.24	0.6947
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Potri.009G085400 [exp]	4.47	0.7012
					Potri.003G193100 [exp]	6.00	0.6908
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Potri.014G085400 [exp]	8.48	0.6272
AT5G65180			ENTH/VHS family protein (.1.2)		Potri.005G080800 [exp]	10.95	0.6906
AT5G42320			Zn-dependent exopeptidases sup...		Potri.005G250300 [exp]	12.48	0.6360
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Potri.011G087900 [exp]	15.16	0.5952	Pt-WRK.1
AT4G11270			Transducin/WD40 repeat-like su...		Potri.001G098700 [exp]	15.90	0.6284
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Potri.013G038301 [exp]	21.81	0.6342
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Potri.005G124300 [exp]	22.69	0.6787

Compare expression of checked genes

Potri.010G131000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.