Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26100 270 / 6e-92 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT5G38630 170 / 8e-53 ACYB-1 cytochrome B561-1 (.1) AT4G25570 143 / 5e-42 ACYB-2 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT1G14730 93 / 8e-23 Cytochrome b561/ferric reductase transmembrane protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G115200 [exp] 389 / 7e-139 AT1G26100 270 / 6e-92 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.004G103800 [exp] 186 / 1e-58 AT5G38630 301 / 2e-104 cytochrome B561-1 (.1) Potri.017G111700 [exp] 185 / 2e-58 AT5G38630 321 / 2e-112 cytochrome B561-1 (.1) Potri.008G115300 [exp] 155 / 8e-47 AT5G38630 272 / 7e-93 cytochrome B561-1 (.1) Potri.015G143700 [exp] 141 / 2e-41 AT4G25570 297 / 8e-103 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.012G141000 [exp] 139 / 1e-40 AT4G25570 254 / 5e-86 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.008G138300 [exp] 106 / 7e-28 AT1G14730 252 / 2e-85 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.010G102400 [exp] 105 / 8e-28 AT1G14730 271 / 7e-93 Cytochrome b561/ferric reductase transmembrane protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021715 [exp] 241 / 3e-80 AT1G26100 241 / 3e-80 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10003076 [exp] 163 / 2e-50 AT5G38630 281 / 2e-97 cytochrome B561-1 (.1) Lus10039216 [exp] 158 / 5e-48 AT4G25570 305 / 6e-106 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10014986 [exp] 153 / 4e-45 AT4G25570 331 / 8e-115 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10038866 [exp] 151 / 4e-45 AT4G25570 326 / 3e-114 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10034074 [exp] 147 / 1e-42 AT5G38630 287 / 7e-98 cytochrome B561-1 (.1) Lus10027461 [exp] 137 / 3e-39 AT4G25570 287 / 3e-98 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10034427 [exp] 96 / 7e-24 AT1G14730 280 / 4e-96 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10031935 [exp] 91 / 4e-22 AT1G14730 284 / 8e-98 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10028996 [exp] 90 / 9e-22 AT4G25570 145 / 4e-43 Cytochrome b561/ferric reductase transmembrane protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [poplar] [flax] 2heme_cytochrom PF03188 [poplar] [flax] Cytochrom_B561 Eukaryotic cytochrome b561
Representative CDS sequence Show only first row Show all	>Potri.010G131100.1 pacid=42800203 polypeptide=Potri.010G131100.1.p locus=Potri.010G131100 ID=Potri.010G131100.1.v4.1 annot-version=v4.1 ATGGCAACCTCAGTTTCTTCATCGCTAGTCCCACTTCTCTTCTTTGCAAGAATCTCGGGTCTTTTGGCTGCAGCTTTAGTCATTTATTGGGCTCTTGTTT TCAAGTCTAGCTTTCTACCTCAATCTACCTCTCAAGAAGACCTCGTTTATGCAGTTCTCCATCCTTTGCTAATGGTGATTGGTTTCATTCTCATCAGTGG AGAAGCAATCTTGGTACATAGATGGTTGCCTGGTTCAAGGGGTTTCAAGAAATCAGTGCATTTGTGTCTTCAAGGACTGGCTTTGGCTTGTGGGATTTTT GGGATATGGACAAAGTTTCATGGCAACGATGGGATTGTGGCAAATTTCTTTAGTTTGCATTCCTGGATGGGTTTAATCTGCATATCCTTGTTCGGAGCTC AGTGGTTGATGGGTTTCATGAGCTTTTGGCACCGAGGCGAAATGCGAACAGTGAGGATAAGAGTGTTACCATGGCACGTCTTTCTTGGTCTCTACACATA TGGGTTAGCCGTGGCAACAGCAGAAACAGGACTACTAGAAAAGATTACATTCTTGCAAACAAAGAAAGATGCATCCAAACACTCCTCGGAATCCATGGTT GTCAATAGTTTAGGACTGAGTTTAGCTTTGCTGAGTGGCATTATAATATTAGCCGCAGTTTCTCCCAAGTTTCAAAGGGACCTTACGTACTCTGAATCAA AGAAAATGATGACAATATGA
AA sequence Show only first row Show all	>Potri.010G131100.1 pacid=42800203 polypeptide=Potri.010G131100.1.p locus=Potri.010G131100 ID=Potri.010G131100.1.v4.1 annot-version=v4.1 MATSVSSSLVPLLFFARISGLLAAALVIYWALVFKSSFLPQSTSQEDLVYAVLHPLLMVIGFILISGEAILVHRWLPGSRGFKKSVHLCLQGLALACGIF GIWTKFHGNDGIVANFFSLHSWMGLICISLFGAQWLMGFMSFWHRGEMRTVRIRVLPWHVFLGLYTYGLAVATAETGLLEKITFLQTKKDASKHSSESMV VNSLGLSLALLSGIIILAAVSPKFQRDLTYSESKKMMTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26100			Cytochrome b561/ferric reducta...		Potri.010G131100 [exp]	0	1
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Potri.002G014100 [exp]	3.00	0.8488
AT4G34215			Domain of unknown function (DU...		Potri.009G096400 [exp]	4.58	0.8562
AT4G22010		SKS4	SKU5 similar 4 (.1)		Potri.014G154500 [exp]	4.58	0.8922
AT4G09970			unknown protein		Potri.013G102300 [exp]	8.36	0.8236
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Potri.010G082200 [exp]	9.16	0.8444
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Potri.015G026600 [exp]	9.89	0.8107
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.006G098300 [exp]	9.94	0.7885	PtrAUX1,AUX1.2
AT4G15140			unknown protein		Potri.011G108700 [exp]	10.58	0.8491
AT5G36930			Disease resistance protein (TI...		Potri.005G206400 [exp]	12.48	0.7955
AT3G50120			Plant protein of unknown funct...		Potri.003G159300 [exp]	14.00	0.8781

Compare expression of checked genes

Potri.010G131100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.