Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21360 250 / 2e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G131300 [exp] 604 / 0 AT3G21360 241 / 3e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G190100 [exp] 248 / 1e-80 AT3G21360 501 / 5e-180 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035053 [exp] 482 / 7e-173 AT3G21360 246 / 4e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017883 [exp] 479 / 7e-172 AT3G21360 247 / 2e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10025819 [exp] 239 / 7e-77 AT3G21360 428 / 2e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10038283 [exp] 233 / 6e-75 AT3G21360 494 / 1e-177 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10025818 [exp] 234 / 8e-75 AT3G21360 496 / 6e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006838 [exp] 227 / 2e-72 AT3G21360 397 / 5e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006839 [exp] 221 / 5e-70 AT3G21360 435 / 3e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037585 [exp] 212 / 1e-66 AT3G21360 454 / 2e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006835 [exp] 209 / 2e-65 AT3G21360 375 / 4e-130 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10038282 [exp] 184 / 1e-56 AT3G21360 367 / 2e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF02668 [poplar] [flax] TauD Taurine catabolism dioxygenase TauD, TfdA family
Representative CDS sequence Show only first row Show all	>Potri.010G131200.1 pacid=42799527 polypeptide=Potri.010G131200.1.p locus=Potri.010G131200 ID=Potri.010G131200.1.v4.1 annot-version=v4.1 ATGGAAATCTCTAACAAGGACTTCAAGGTAGGAAAATGTGAGGGCCAGAAAGTGGTGGATGGTGAAACCATGCCACTAGTGCTGCAACCCCCAGAACCCA ACAAGAGTGACACAGAGTCATTAATCTCAGTTCTAAAGCAGAACAAGCACTGGTTTGAGCAAATGCTCATAAAAAACAGTGCTGTTCTGCTTCGAGGTTT TGATGTGAAGAATGCTGAGGACTTCAATGATATTATTGAGGCCTTTGGCTGGGATGACATGCGTTACATAGGGCCTGCGCCACGGACACACGTGTACAAA CGCATATGGACTGCCAATGAGGGACCCCTGTCGGAATCCATATTCTACCACCATGAAATGGTTCATATAAAAGAATCTCCGAAGAAAGTGATGTTTTTCT GTGAAATACCCCCACCAGAAGGTGGACAGACACCCTTTGTTCCAAGCTTTAGAGTTACAGAAAGGATGCTAGAAGAGTTCCCTGAAGCAGTGGAAGAAGT TGAGGCAAAAGGACTGAAGTACACTTTCACAGCTCCTAGCAAAGACGATACATCATCGATGAGAGGTAGAGGTTGGGAGCATGCTTTCGGAACATCAGAC AAGGCAGAGGCTGAGAGAAGGGCTAAGGCTATAGGGATGGACATGGAGTGGCTGCCTAATGGAGGAGTGAAGACAATAATGGGTCCTCCATCATTAACGA AAGTGTTTGATGGAAGAAAAGGGAGGAGAATGTGGTTCAACACAGTCGTTGGCATGCATGGTAAGGAGTCCAGCTCGGCTATGTTAGCAGATGGAACAGA GATACCAGAAAATTTTGTGAAAAGGTGTGGGCAAATCATTGAAGAAGAGAGCATCCAATTTAAGTGGGAAAAAGGTGATGTCCTTTTCCTTGATAACATG GCTTTGCTTCATGGAAGGAGGCCATCTTTGCCACCTAGAAAAGTCCTTGTTGCTATTTGCAAGTAG
AA sequence Show only first row Show all	>Potri.010G131200.1 pacid=42799527 polypeptide=Potri.010G131200.1.p locus=Potri.010G131200 ID=Potri.010G131200.1.v4.1 annot-version=v4.1 MEISNKDFKVGKCEGQKVVDGETMPLVLQPPEPNKSDTESLISVLKQNKHWFEQMLIKNSAVLLRGFDVKNAEDFNDIIEAFGWDDMRYIGPAPRTHVYK RIWTANEGPLSESIFYHHEMVHIKESPKKVMFFCEIPPPEGGQTPFVPSFRVTERMLEEFPEAVEEVEAKGLKYTFTAPSKDDTSSMRGRGWEHAFGTSD KAEAERRAKAIGMDMEWLPNGGVKTIMGPPSLTKVFDGRKGRRMWFNTVVGMHGKESSSAMLADGTEIPENFVKRCGQIIEEESIQFKWEKGDVLFLDNM ALLHGRRPSLPPRKVLVAICK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Potri.010G131200 [exp]	0	1
AT5G52390			PAR1 protein (.1)		Potri.009G040000 [exp]	1.41	0.9666
AT5G59100			Subtilisin-like serine endopep...		Potri.010G196700 [exp]	2.00	0.9599
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116900 [exp]	4.24	0.9407
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G117001 [exp]	5.91	0.9376
					Potri.013G045700 [exp]	9.00	0.9309
					Potri.019G002400 [exp]	9.38	0.9194
					Potri.002G101101 [exp]	9.48	0.9234
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.010G073232 [exp]	10.00	0.9077
AT1G10180			unknown protein		Potri.014G195400 [exp]	12.72	0.9368
AT2G45650	MADS	AGL6	AGAMOUS-like 6 (.1)		Potri.015G134800 [exp]	17.14	0.8901

Compare expression of checked genes

Potri.010G131200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.