Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26110 494 / 1e-168 DCP5 decapping 5 (.1.2) AT5G45330 136 / 9e-34 DCP5-L decapping 5-like (.1) AT4G19360 85 / 7e-19 SCD6 protein-related (.1.2) AT4G19340 55 / 4e-08 SCD6 protein-related (.1) AT4G19260 55 / 7e-08 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G19330 52 / 7e-07 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G114900 [exp] 832 / 0 AT1G26110 419 / 5e-139 decapping 5 (.1.2) Potri.004G104000 [exp] 440 / 1e-147 AT1G26110 207 / 7e-59 decapping 5 (.1.2) Potri.017G111500 [exp] 428 / 4e-143 AT1G26110 208 / 2e-59 decapping 5 (.1.2) Potri.004G235100 [exp] 285 / 2e-88 AT5G45330 229 / 7e-68 decapping 5-like (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035052 [exp] 563 / 0 AT5G45330 422 / 4e-140 decapping 5-like (.1) Lus10017885 [exp] 560 / 0 AT1G26110 473 / 5e-160 decapping 5 (.1.2) Lus10017884 [exp] 558 / 0 AT1G26110 462 / 6e-156 decapping 5 (.1.2) Lus10035051 [exp] 469 / 2e-158 AT1G26110 297 / 1e-92 decapping 5 (.1.2) Lus10034747 [exp] 135 / 1e-33 AT1G26110 229 / 5e-68 decapping 5 (.1.2) Lus10033287 [exp] 103 / 8e-23 AT1G26110 222 / 3e-65 decapping 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09532 [poplar] [flax] FDF FDF domain CL0527 [poplar] [flax] Sm-like PF14438 [poplar] [flax] SM-ATX Ataxin 2 SM domain
Representative CDS sequence Show only first row Show all	>Potri.010G131400.2 pacid=42797399 polypeptide=Potri.010G131400.2.p locus=Potri.010G131400 ID=Potri.010G131400.2.v4.1 annot-version=v4.1 ATGGAAGCAGTAGAGAACAGTAACAACACAGCGTCAACGTCGAGATCCAGTTCGACGGCGGACTCTTATGTAGGTAGTTTGATTAGCCTGACATCAAAGA GCGAGATCAGATACGAGGGTATTCTTTACAATATCAACACTGATGAGTCCAGTATTGGATTGAAAAACGTGCGGTCGTTTGGAACAGAAGGGCGGAAAAA GGATGGTCCACAAATCCTTCCCAGTGATAAAGTTTATGAATACATATTGTTCCGTGGAAGTGACATCAAGGACTTACAGGTTAAGTCTTCACCACCAGTT CAGTCTGCACCACATATAAACAATGACCCAGCAATCATACAGTCTCATTATCCTCGTCCTTTCGCCACCTCCACCGGTTTTCCTTCAGCTGTTAGTGGGT CTTTAACTGATCTTGGATCCCATAATGGACCAGGGGGACAACCTGCTATGAATTTCCAAGGCGGGATGCCTTTATATCAACCTGGAGGGAGCTTAGGAAC TTGGGGAGCTTCACCTCCTCCTCCAAATGCAAATGGTAGTGGCCTTGCTATGCCAATGTATTGGCAAGGTTTCTATGCCCCCCCAAATGGGCTTCCACAT TTACACCAACAATCTTTGCTTCGACCACCACCTGGACTGGCAATGCCTTCTTCCATGCAGCAACCGATGCAATACCCCAATTTCAATACTTCTTTACTCA CTGGAATCTCAAATTTACCTGGTCCGAACTTGCCAGTCTCAACCTTGCCATCTTCAAACTTACCGATTTCAACCTTGCAAGCTTCTTTGCCAGATGTTCT ACCTCCTCTACTTCCTGGCATCGCTAGTTCCCTTAATTTCACATCCCATTCTGCAGTGCCATCAACTTTGCCTTCAACTGTACCCCTAATGCCCTCTGCC TCTCTGCCTTCTGAAACATTACCCAGTTTGATGCCTGATAAGATTCCTAGTTCTGCACTTCCTACAACCAATTTAGGCGCTAGTTTGCCAGTGCTATCTC CTTTGACAACTTCCAGCCCAGATTTAAACACCATCGCACCACCAATCTCCAACAAGCTTAGTTCAATTCCTGGCCCAACAATGCCTTATCAAAGCACTGC ACAATCTGCACCCTCTGGTGTTTTGGCATCCAATTCTCTTCGCACAGAAATACCAACACCAATTCCTTCTTTGGTAACCCCTGGCCAGCTATTGCAGTCA GGATCACCAATTGTTCCTTCTACTCAGCCTGTGCAAACAGCCCATAAAGATGTGGAGGTTGTTAAAGTATCACCAGCACCAGAACCATCTGTACCAGCCA CCACAGAAGCTCAGCCGCCAATACTCCCATTGCCTTTTCCTACACGTGCTAGCCATAAGCCAAATGGGGCTACTTTTAATGCCCGCCATGGTTACCATGG ACGCGGAAGAGGAAGAGGATATGGGAGTTCACGACCACTGACAAAATTCACTGAGGATTTTGATTTTATGGCAATGAATGAGAAGTTCAAGAAGGATGAA GTTTGGGGCCACCTTGGCAAGAATAACAAATCTCATTCAAAGGATAGAGAAGATGGAGATGTCAGTGGTGAAGATGATTTTCAAGATGAAGATGAGGATG AACTAGCTAAGGTTGAGGCTAAGCCTGTGTATAACAAGGATGACTTTTTTGATACCATCTCATGTAATGCGCGTGATCTTGAATCACAAAATGGAAGGAC AAGATTCTCGGAGCAAATGAAATTAGACACAGAGACATTTGGTGACTTTTCAAGGTATCGGGGAGGACGAGGTGGTCGTGGTCCTCCACGTGGTGGTCGT TTTCATGGATCTTATTATGGAAGGGGGAATGGGTATGGCTATGTTGGGAGGGGCAGGGGCAGGGGCCGGGGCTGGGCCGGGCCTGATCGTGCTTCTTAG
AA sequence Show only first row Show all	>Potri.010G131400.2 pacid=42797399 polypeptide=Potri.010G131400.2.p locus=Potri.010G131400 ID=Potri.010G131400.2.v4.1 annot-version=v4.1 MEAVENSNNTASTSRSSSTADSYVGSLISLTSKSEIRYEGILYNINTDESSIGLKNVRSFGTEGRKKDGPQILPSDKVYEYILFRGSDIKDLQVKSSPPV QSAPHINNDPAIIQSHYPRPFATSTGFPSAVSGSLTDLGSHNGPGGQPAMNFQGGMPLYQPGGSLGTWGASPPPPNANGSGLAMPMYWQGFYAPPNGLPH LHQQSLLRPPPGLAMPSSMQQPMQYPNFNTSLLTGISNLPGPNLPVSTLPSSNLPISTLQASLPDVLPPLLPGIASSLNFTSHSAVPSTLPSTVPLMPSA SLPSETLPSLMPDKIPSSALPTTNLGASLPVLSPLTTSSPDLNTIAPPISNKLSSIPGPTMPYQSTAQSAPSGVLASNSLRTEIPTPIPSLVTPGQLLQS GSPIVPSTQPVQTAHKDVEVVKVSPAPEPSVPATTEAQPPILPLPFPTRASHKPNGATFNARHGYHGRGRGRGYGSSRPLTKFTEDFDFMAMNEKFKKDE VWGHLGKNNKSHSKDREDGDVSGEDDFQDEDEDELAKVEAKPVYNKDDFFDTISCNARDLESQNGRTRFSEQMKLDTETFGDFSRYRGGRGGRGPPRGGR FHGSYYGRGNGYGYVGRGRGRGRGWAGPDRAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.010G131400 [exp]	0	1
AT1G10580			Transducin/WD40 repeat-like su...		Potri.008G172800 [exp]	1.00	0.9262
AT4G10760		MTA, EMB1706	EMBRYO DEFECTIVE 1706, mRNAade...		Potri.001G085200 [exp]	2.00	0.9151
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.004G209000 [exp]	3.46	0.9179
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Potri.009G041600 [exp]	4.69	0.9196
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Potri.002G149800 [exp]	5.47	0.9024
AT5G10710			unknown protein		Potri.018G005900 [exp]	5.74	0.8856
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Potri.015G090200 [exp]	7.74	0.9059	ELF5.2
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Potri.004G204300 [exp]	8.00	0.9037	IDH1.1
AT2G01410			NHL domain-containing protein ...		Potri.001G156300 [exp]	8.83	0.9048
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Potri.012G093000 [exp]	9.16	0.8884

Compare expression of checked genes

Potri.010G131400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.