Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68750 1536 / 0 ATPPC4 phosphoenolpyruvate carboxylase 4 (.1) AT2G42600 496 / 3e-159 ATPPC2 phosphoenolpyruvate carboxylase 2 (.1.2) AT1G53310 494 / 2e-158 ATPEPC1, ATPPC1 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) AT3G14940 493 / 4e-158 ATPPC3 phosphoenolpyruvate carboxylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G114200 [exp] 1882 / 0 AT1G68750 1514 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Potri.011G110700 [exp] 496 / 4e-159 AT3G14940 1766 / 0.0 phosphoenolpyruvate carboxylase 3 (.1) Potri.001G391900 [exp] 491 / 4e-157 AT3G14940 1776 / 0.0 phosphoenolpyruvate carboxylase 3 (.1) Potri.002G214100 [exp] 482 / 6e-154 AT1G53310 1699 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035050 [exp] 1596 / 0 AT1G68750 1560 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Lus10017886 [exp] 1586 / 0 AT1G68750 1566 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Lus10033610 [exp] 491 / 3e-157 AT1G53310 1722 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10020701 [exp] 491 / 6e-157 AT1G53310 1714 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10029837 [exp] 488 / 4e-156 AT2G42600 1719 / 0.0 phosphoenolpyruvate carboxylase 2 (.1.2) Lus10017653 [exp] 488 / 6e-156 AT1G53310 1725 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10000065 [exp] 126 / 8e-33 AT3G14940 364 / 9e-121 phosphoenolpyruvate carboxylase 3 (.1) Lus10017651 [exp] 78 / 2e-16 AT1G53310 273 / 8e-87 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [poplar] [flax] PK_TIM PF00311 [poplar] [flax] PEPcase Phosphoenolpyruvate carboxylase
Representative CDS sequence Show only first row Show all	>Potri.010G131800.1 pacid=42797723 polypeptide=Potri.010G131800.1.p locus=Potri.010G131800 ID=Potri.010G131800.1.v4.1 annot-version=v4.1 ATGACGGACATAACAGACGATATAGCTGAGGAAATCTCCTTCCAAGGATTTGATGATTACTGTAAACTGCTTAAAAATTTATTAAACGATGTGTTGCAGA GAGAAGTTGGTACTGAATTCGTCGACAAACTTGAACGCAACCTCACTCTCGCTCAGAGTGCTTGTAATTTGAGATTGGCGGGAATAGAAGACACTGCCGA GTTGCTGGAGAAGCAGCTCGCGTCAGAGATATCAAAAATGACATTAGAGGAAGCATTGACACTTGCTCGTGCTTTTAGCCATTATCTTAATTTGATGGGA ATTGCTGAGACCCATCACAGGGCACGTAAGACAAGGAATTTGGCGAATCTATCAAAATCTTGTGATGAAGTCTTTAATCAGCTGTTGCACGGTGGAAAAT CGGGTGATGAACTTTATGCCTCTGTTTGCATGCAGGAGGTTGAAATTGTTCTTACTGCACATCCCACTCAAATTAATCGCCGTACTTTGCAATACAAGCA TGTTAGAATTGCTCATCTTTTAGAATACAACGATCGACCTGATCTTACACAGGAAGATAGAGAAATCCTTATTGAAGATTTGGTAAGAGAAATTACTTCA ATATGGCAGACAGATGAGCTTAGGCGCCACAAACCTACACCAGTAGATGAAGCCAGGGCTGGCTTGCACATTGTGGAGCAGTCTCTATGGAAAGCAGTAC CTCATTTTTTACGACGTGTCAGTAATGCACTAAAGAAGCATACAGGAAAGCCACTTCCATTAACTTGCACGCCAATAAAATTTGGGTCTTGGATGGGGGG TGATAGAGATGGAAATCCAAATGTAACAGCGAAGGTAACACGAGATGTCTCTCTCTTATCAAGGTGGATGGCTATTGACCTTTACATTAGAGAAGTTGAT AGTCTCAGATTTGAACTGTCCATGACTCGCTGCAGTGATAAGTTGTCAAGAGAGGCTCATGAAATTCTAGAGCGAGAAACTTCACCAGAGGATCGGCATG AGAGTTGGAATCAACCCACAAGCAGAAATCAAACAAAGCTTCATCAGCATGCTCCACCACTTCCCACACAACTTCCAGCTAGAGCTGATCTTCCTGCCTG CACTGAATGCGGTGATGACGGTGGTTCACATCCCAAACTAGAACTTCCAGGGACTGATTACATGCCATTGAGTCGTCAGGATGTTCAGGGTTCTTCAAAT TCAGAATCTTCATTCCACAAGTCTGGTCATGGTTCTAGCAAATCAATTGCTAATGGAAGCATTGCTAATTCTAACGGCCATCAATCAGCTCCAAGTCCAC GTGGATCTTTCACCTCCAGTCAACTCCTTGCTCAGAGAAAATGTTTTGCAGAATCTAAGATAGGAAGATCCAGCTTCCAGAAGCTTCTAGAGCCAAGTCC ACCTGAACGTCCTGGAATCGCTCCTTATAGAATTGTTCTTGGCCATGTGAAAGATAAGCTTATGAAGGCTAGAAGACGTCTGGAACTTCTTCTTGAGGAT CTTCCCTGTGAACATGAGCCTTGGGATTACTATGAGACAACAGACCAATTGTTGGAACCACTGCTTCTATGCTACGAGTCTCTGCAATCTTGTGGAGCTG GGGTGCTTGCAGATGGCCGGCTGGTTGACCTGATAAGAAGAGTTGCGACTTTTGGAATGGTATTAATGAAGCTTGACTTGCGTCAGGAATCTGGTAGACA TTCTGAAGCACTAGATGCAATCACCAAATATTTGGATATGGGAACATATAGTGAGTGGGATGAAGAAAAGAAACTGGAATTCCTAACAAGAGAGCTCAAA AGCAAGAGGCCACTAGTTCCTCCCACCATTCAGGTTGCTCCTGATGTTAAAGAAGTCTTGGATACATTCCGTGTTGCTGCTGAGCTAGGGAGTGATTCAC TTGGAGCATATGTGATCTCTATGGCATCCAATGCGAGCGATGTCCTTGCTGTGGAGCTTTTACAAAAAGATGCCCGTCTTGCTGTTAGTGGCGAGCTAGG GAGACCATGTCCTAGAGGAACGCTGCGGGTGGTTCCATTGTTTGAAACTGTGAAAGATCTTAGAGGGGCTGGTTCGGTTATCAGGAAATTATTATCAATT GATTGGTACTCAGAGCACATTGTAAAGAACCATAACGGGCATCAGGAGGTGATGGTTGGATATTCTGATTCTGGTAAAGATGCTGGGCGGTTCACTGCTG CATGGGAACTTTACAAAGCCCAAGAGGATGTTGCGGCAGCTTGCAAAGATCATAAAGTTAAAGTAACTCTATTCCATGGGCGAGGAGGGAGTATCGGTCG TGGTGGTGGACCGACATATCTTGCCATTCAATCCCAACCACCAGGTTCAGTGATGGGTACTCTTAGGTCAACTGAGCAAGGAGAAATGGTGCAAGCCAAG TTCGGGCTGCCACACACAGCTGTTAGACAGTTAGAGATATACACAACTGCAGTTCTGCTTGCAACATTAAAACCCCCAGAGCTACCTCGAGAAGAAAAAT GGCGTAATCTCATGGATGAGATTTCAACAATCAGCTGCCAAAGTTACCGGAGCACAGTATATGAAAACCCGGAATTTCTTGCCTACTTTCACGAGGCTAC TCCACAAGCTGAGCTTGGTTTCCTTAACATAGGAAGCCGGCCCACAAGAAGAAAGAGCTCAACAGGAATCGGACATCTTCGTGCCATTCCATGGGTATTT GCGTGGACCCAAACAAGATTTGTTCTTCCAGCCTGGCTAGGAGTTGGGGCAGGTTTGAAGGGTGTTTGTGAGAAGGGACACACTCAAGAGTTGAAAGCAA TGTACAAAGAATGGCCTTTCTTCCAATCTACCATAGACCTGATAGAGATGATTCTGGGGAAGGCAGACATTCATATAGCGAAGCACTATGATGAAGTGCT CGTATCTGATAAGAAGAGGAGAGAACTTGGTGCTGAATTAAGAAGGGAGCTCTTAACAACTGAGAAGTGTGTATTGGTGGTTAGTGGGCATGAGAAGTTG TCGGAAAACAACCGGAGCTTGAGGCGGCTTATCGAGAGCAGGCTACCGTATCTTAATCCTATGAATTTGTTACAGGTTGAGATTCTAAAGAGGTTGAGAA GTGATGATGACAACCACAAACTCAGAGATGCTCTGCTTATTACTATAAATGGTATTGCTGCTGGGATGAGGAACACAGGTTGA
AA sequence Show only first row Show all	>Potri.010G131800.1 pacid=42797723 polypeptide=Potri.010G131800.1.p locus=Potri.010G131800 ID=Potri.010G131800.1.v4.1 annot-version=v4.1 MTDITDDIAEEISFQGFDDYCKLLKNLLNDVLQREVGTEFVDKLERNLTLAQSACNLRLAGIEDTAELLEKQLASEISKMTLEEALTLARAFSHYLNLMG IAETHHRARKTRNLANLSKSCDEVFNQLLHGGKSGDELYASVCMQEVEIVLTAHPTQINRRTLQYKHVRIAHLLEYNDRPDLTQEDREILIEDLVREITS IWQTDELRRHKPTPVDEARAGLHIVEQSLWKAVPHFLRRVSNALKKHTGKPLPLTCTPIKFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVD SLRFELSMTRCSDKLSREAHEILERETSPEDRHESWNQPTSRNQTKLHQHAPPLPTQLPARADLPACTECGDDGGSHPKLELPGTDYMPLSRQDVQGSSN SESSFHKSGHGSSKSIANGSIANSNGHQSAPSPRGSFTSSQLLAQRKCFAESKIGRSSFQKLLEPSPPERPGIAPYRIVLGHVKDKLMKARRRLELLLED LPCEHEPWDYYETTDQLLEPLLLCYESLQSCGAGVLADGRLVDLIRRVATFGMVLMKLDLRQESGRHSEALDAITKYLDMGTYSEWDEEKKLEFLTRELK SKRPLVPPTIQVAPDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPRGTLRVVPLFETVKDLRGAGSVIRKLLSI DWYSEHIVKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVAAACKDHKVKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAK FGLPHTAVRQLEIYTTAVLLATLKPPELPREEKWRNLMDEISTISCQSYRSTVYENPEFLAYFHEATPQAELGFLNIGSRPTRRKSSTGIGHLRAIPWVF AWTQTRFVLPAWLGVGAGLKGVCEKGHTQELKAMYKEWPFFQSTIDLIEMILGKADIHIAKHYDEVLVSDKKRRELGAELRRELLTTEKCVLVVSGHEKL SENNRSLRRLIESRLPYLNPMNLLQVEILKRLRSDDDNHKLRDALLITINGIAAGMRNTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Potri.010G131800 [exp]	0	1
					Potri.003G175432 [exp]	2.44	0.8790
AT2G47430		CKI1	CYTOKININ-INDEPENDENT 1, Signa...		Potri.014G121500 [exp]	4.24	0.8354	CKI1.5
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.009G143500 [exp]	13.41	0.7903
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Potri.010G183766 [exp]	15.87	0.8046
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.006G271400 [exp]	24.89	0.7740
					Potri.019G026101 [exp]	26.98	0.7821
AT5G06810			Mitochondrial transcription te...		Potri.016G048200 [exp]	38.06	0.7728
AT3G57600	AP2_ERF	DREB2F	Integrase-type DNA-binding sup...		Potri.006G054500 [exp]	41.76	0.7429	Pt-DREB2.1
AT2G41080			Tetratricopeptide repeat (TPR)...		Potri.016G075000 [exp]	47.56	0.7538
AT4G11130		SMD1, RDR2	SILENCING MOVEMENT DEFICIENT 1...		Potri.015G073700 [exp]	48.46	0.7237	RDR904

Compare expression of checked genes

Potri.010G131800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.