Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25620 852 / 0 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT1G31770 709 / 0 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT4G27420 626 / 0 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT1G71960 540 / 0 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) AT5G06530 536 / 0 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT3G52310 525 / 2e-177 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT3G13220 497 / 7e-168 MSR02, AtABCG26, ABCG26, WBC27 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) AT2G01320 292 / 1e-88 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT3G55090 258 / 9e-76 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT3G55100 254 / 4e-75 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G236500 [exp] 722 / 0 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.003G046800 [exp] 689 / 0 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.001G404000 [exp] 634 / 0 AT4G27420 690 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.011G123200 [exp] 624 / 0 AT4G27420 737 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.013G111900 [exp] 566 / 0 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.019G083000 [exp] 565 / 0 AT1G71960 782 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.016G065900 [exp] 547 / 0 AT5G06530 1139 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.006G199500 [exp] 502 / 8e-169 AT5G06530 1013 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.001G370600 [exp] 493 / 4e-166 AT3G13220 1012 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034387 [exp] 854 / 0 AT3G25620 791 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Lus10034775 [exp] 727 / 0 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10035692 [exp] 714 / 0 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10033314 [exp] 703 / 0 AT1G31770 941 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10037283 [exp] 701 / 0 AT1G31770 984 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10025596 [exp] 632 / 0 AT4G27420 687 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10025597 [exp] 613 / 0 AT4G27420 707 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10029635 [exp] 611 / 0 AT4G27420 698 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10028704 [exp] 530 / 1e-180 AT1G71960 818 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Lus10015994 [exp] 521 / 6e-178 AT5G06530 1033 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.010G131900.1 pacid=42797527 polypeptide=Potri.010G131900.1.p locus=Potri.010G131900 ID=Potri.010G131900.1.v4.1 annot-version=v4.1 ATGATGCCTCCTGAGCAGGAAAATACTAATATCAGTACCACTGGCAATATGGGACCGTCTAACGTCATGCTCACAAACTGGACCGAGACTGTCACAGTTC ATGCTGAACCTTCCGTTTCTTCATCTATTAATAACACAAGCTCATGTTCACAAGATCAAGTATTGCAAGGTCAACAAGAACCGGCCCTATCAAGATTCAC GATTTTACGTGCTTCTTTACGCCCTGTAACACTTGAGTTTGCAGATGTTGCATACAGTGTTAGTTTGTCCACGAAAGGAACTTGGTTTACTTCAAGTGAA CCAAAATCTACAAGAACAGTACTTAATGGTGCTAGTGGTATCGTTCGACCCGGCGAACTGCTAGCAATGCTTGGTCCATCAGGAAGTGGCAAGACAACAC TTTTAACAGCTCTAGCCGGTAGATTACCTGGAAAGGTTTCTGGTACTATAACATACAATGGCCAGGCTTTTTCTAGCTCCATGAAGCGCAGAACAGGTTT TGTCACTCAAGATGATGTGCTGTATCCCCATCTTACAGTTTTAGAGACCTTAACCTATGCTGCTTTATTAAGGCTACCAAAAAAGCTCACTAGACAAGAG AAAATAGAGCAGGCTGAGTTGATTATAATGGAGCTTGGACTAACTAGGTGTAGAAATAGTGTAGTGGGTGGACCTTTGTTTCGGGGCATATCGGGTGGTG AACGTAAACGGGTCAGTATCGGGCTAGAAATGTTGGTTAACCCGAGTTTGTTATTGCTTGATGAACCCACTTCAGGGCTTGATTCTACCACAGCCCAGCG TATTGTGGCCACTTTAAGGGGACTAGCAAGAGGTGGTAGGACTGTGGTAACTACTATTCATCAACCTTCAAGCAGGTTGTATAGGATGTTTGATAAGGTG GTGGTTTTGTCGGAAGGGTGTCCGATTTATAGCGGGCAGGCCGGTCGGGTCATGGAATATTTTAAATCATTAGGATACAATCCCGGGTTCAATTTCATGA ATCCTGCTGATTTTCTGCTTGATCTTGCTAATGGTTTAGTTCCTGATACCAGATCACAAGATGACCAGCTGGAGTTTCATGGAAGATTGGACCACCATGA TGATCAAAATTCAGCAAAACAGTCTTTGATATCGTCTTATAAGAACAACTTGTATCCTCTGTTGATATCTGAAATTCATCGAAATGCTCAAGACCCGGTT CTTCCTTCATCATCACTGAGAGGTTCTGAGGTTCAATGGACCACCAGCTGCTGGCAGCAGTTCAAGGTATTGCTGAGAAGGGGCTTGCAAGAAAGGAAGC ACGAGTCTTATTCAGGCTTAAGGATTTTCCAAGTTATTTCAGTTTCGATTCTTTCTGGCCTTTTATGGTGGCACTCTGATACTTCACACATACAAGATCA GGTGGGACTTCTCTTCTTTTTCTCCATCTTCTGGGGCTTTTTCCCTCTGTTCAATGCCATATTCGCATTCCCTCAGGAGCGACCGATGCTAATAAAAGAA CGTTCCTCTGGCATGTACAGGCTCTCCTCCTATTATTTTGCAAGAATGGCCGGTGACTTACCAATGGAGCTTGTTATGCCAACTATTTTTGTAACTGTCA CCTATTGGATGGGTGGTCTCAAGCCTTCCCTAATCACTTTCGTACTGACCCTCTTGGTTATCCTTTTCAATGTGCTAGTTTCACAAGGGCTAGGGCTAGC CCTCGGAGCCATTTTAATGGATGTAAAACAGGCCACTACTTTAGCTTCTGTGACAATGCTTGTATTTTTACTTGCTGGTGGATACTACATTCAACACATT CCTCCATTCATAGCTTGGTTGAAGTATATCTCTTTTAGTCACTACTGTTACAAGCTGCTGGTGGGGGTACAGTACTCAGCAACTGAAGTTTATGACTGCG GTTTACAGATGCATTGCAGGGTAATGGATTTTCCTGCTATCAAGTATCTAGGTCTTGATAATATGTGGTGGGATGCAGCTGCTTTGACAATAATGTTGGT GGGATACAGGCTTTTGGCTTATGTGGCTCTAAGAATGGGGCAACCTCACTGA
AA sequence Show only first row Show all	>Potri.010G131900.1 pacid=42797527 polypeptide=Potri.010G131900.1.p locus=Potri.010G131900 ID=Potri.010G131900.1.v4.1 annot-version=v4.1 MMPPEQENTNISTTGNMGPSNVMLTNWTETVTVHAEPSVSSSINNTSSCSQDQVLQGQQEPALSRFTILRASLRPVTLEFADVAYSVSLSTKGTWFTSSE PKSTRTVLNGASGIVRPGELLAMLGPSGSGKTTLLTALAGRLPGKVSGTITYNGQAFSSSMKRRTGFVTQDDVLYPHLTVLETLTYAALLRLPKKLTRQE KIEQAELIIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGLEMLVNPSLLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVVTTIHQPSSRLYRMFDKV VVLSEGCPIYSGQAGRVMEYFKSLGYNPGFNFMNPADFLLDLANGLVPDTRSQDDQLEFHGRLDHHDDQNSAKQSLISSYKNNLYPLLISEIHRNAQDPV LPSSSLRGSEVQWTTSCWQQFKVLLRRGLQERKHESYSGLRIFQVISVSILSGLLWWHSDTSHIQDQVGLLFFFSIFWGFFPLFNAIFAFPQERPMLIKE RSSGMYRLSSYYFARMAGDLPMELVMPTIFVTVTYWMGGLKPSLITFVLTLLVILFNVLVSQGLGLALGAILMDVKQATTLASVTMLVFLLAGGYYIQHI PPFIAWLKYISFSHYCYKLLVGVQYSATEVYDCGLQMHCRVMDFPAIKYLGLDNMWWDAAALTIMLVGYRLLAYVALRMGQPH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25620		ABCG21	ATP-binding cassette G21, ABC-...		Potri.010G131900 [exp]	0	1
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Potri.015G109800 [exp]	8.66	0.7312	RHD2.2
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Potri.012G002700 [exp]	14.59	0.7096
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Potri.017G094500 [exp]	20.56	0.6819
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.001G083700 [exp]	23.10	0.7295	ATHB.3
AT1G07985			Expressed protein (.1)		Potri.001G266500 [exp]	24.08	0.6790
					Potri.010G226050 [exp]	28.10	0.7019
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120401 [exp]	39.30	0.5807
AT3G03990			alpha/beta-Hydrolases superfam...		Potri.002G118900 [exp]	40.62	0.6444
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Potri.002G142200 [exp]	42.89	0.5777
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Potri.015G018800 [exp]	46.73	0.6197

Compare expression of checked genes

Potri.010G131900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.