Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26120 578 / 0 ICME-LIKE1 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) AT5G15860 546 / 0 ICME, ATPCME Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) AT3G02410 535 / 0 ICME-LIKE2 Isoprenylcysteine methylesterase-like 2, alpha/beta-Hydrolases superfamily protein (.1.2) AT1G19190 50 / 1e-06 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G104800 [exp] 545 / 0 AT5G15860 547 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Potri.017G110700 [exp] 544 / 0 AT5G15860 541 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Potri.009G104300 [exp] 46 / 3e-05 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1) Potri.009G104100 [exp] 45 / 0.0001 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104000 [exp] 44 / 0.0002 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G073100 [exp] 42 / 0.0004 AT2G45600 175 / 8e-54 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466400 [exp] 42 / 0.0006 AT2G45600 330 / 1e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466166 [exp] 42 / 0.0008 AT2G45600 335 / 5e-115 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035064 [exp] 628 / 0 AT1G26120 613 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10017889 [exp] 621 / 0 AT1G26120 608 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10019156 [exp] 616 / 0 AT5G15860 558 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10034399 [exp] 613 / 0 AT5G15860 561 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10034083 [exp] 508 / 6e-179 AT5G15860 569 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10003065 [exp] 492 / 3e-172 AT5G15860 554 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10002907 [exp] 48 / 8e-06 AT5G16080 204 / 3e-63 carboxyesterase 17 (.1) Lus10027909 [exp] 43 / 0.0005 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF07859 [poplar] [flax] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.010G132200.2 pacid=42798520 polypeptide=Potri.010G132200.2.p locus=Potri.010G132200 ID=Potri.010G132200.2.v4.1 annot-version=v4.1 ATGCCTTCTCATATCCTGCCTGTCACAAACCCCAACCTCCATTCTTCGAAACAACATTCCTATCTCCGTATTGACCCAACAACAATGCCATTAAAACAAG ATGACCCAATTACAAGCACCAGGCTCGTGTCTTCTCCCTTTGAAGATGAAACCATCATTTCTGTTAGGCCTCTTTTGTCTAGAACTCCAAGTTTTGCAGG TACTACTACAACTTCTTCTTCTGCTAGTTATCAGCAAAGAAGGCGACGTGTTGCCAGTGAAAACTCGCTCTCTTCCCTTTCAGATGAGTCTATTGGTCAA CGCCAATCTCTTGCTCGTGAAGTGGATCGTGCTGCTCCTGAGACATTTCTTCTTACTAGATTGGGCTTGAAGCTTTTAAGATATATGGGGGTAGGGTACA GATGGATCATGAGATTTCTTGCCCTTGGTTGTTACTCTTTGATGCTTTTTCCTGGTTTTATTCAAGTTGGATATTACTATTTCTTCTCTGGTCGGGTTCT GAGAAGTATAGTTTATGGTGATCAACCAAGAAACAGGCTTGATCTATATTTACCAAAAAATACAGATGGTCCAAAACCTGTTGTTGCATTTGTAACAGGA GGAGCCTGGATTATTGGTTATAAAGCATGGGGGTCTCTTTTAGGACAACAGTTATCAGAAAGAGATATCATGGTGGCTTGCATAGATTACAGAAATTATC CTCAGGGAACCATGAGTAATATGGTGGAGGATGCTTCTGGGGGTATCTCTTTTGTCTGCAACAAGATTGCGGAATATGGAGGTGATCCTAACAGGGTTTA TTTAATGGGACAGTCGGCTGGCGCACATATTGCTGCTTGTGCACTTGTGGAGCAGGCAATCAAAGAGGCTGGTGAAGGAGGGAGCACTACCTGGAGTGTT TTGCAGATAAAGACTTATTTTGGCTTATCTGGCGGGTATAATTTGTTTAACTTAGTAGATTACTTCCATAGTCGTGGTCTGTACCGATCCATCTTCTTAA GCATAATGGAAGGGGAAGAGTCTTTAAGACGATTTTCTCCTGAAGTAATTGTACAGGACCCAAACTTGAAAAAAGCAGTTTCTCTTCTACCTCCTATTGT TCTTTTTCATGGCACTGCAGATTATTCCATTCCAGCAGATTCCAGTAAAAGTTTTGCTGAAACCCTTCAAAGTGTCGGAGTTAGAGCTGAATCAATTTTA TATGAAGGGAAGACTCATACAGATTTGTTTCTACAGGATCCAATGAGAGGTGGCAACGATAGGATGTTTGAAGATTTAGTGTCCATCATTCATTCTGATG ACAGAGAAGCCCAAGCCAAAGATGAAGTGGCTCCTCCAAGAAGACGCCTCGTACCTGAATTCATGTTACAGTTGGCTCACAGAGTGAGCCCTTTTTAA
AA sequence Show only first row Show all	>Potri.010G132200.2 pacid=42798520 polypeptide=Potri.010G132200.2.p locus=Potri.010G132200 ID=Potri.010G132200.2.v4.1 annot-version=v4.1 MPSHILPVTNPNLHSSKQHSYLRIDPTTMPLKQDDPITSTRLVSSPFEDETIISVRPLLSRTPSFAGTTTTSSSASYQQRRRRVASENSLSSLSDESIGQ RQSLAREVDRAAPETFLLTRLGLKLLRYMGVGYRWIMRFLALGCYSLMLFPGFIQVGYYYFFSGRVLRSIVYGDQPRNRLDLYLPKNTDGPKPVVAFVTG GAWIIGYKAWGSLLGQQLSERDIMVACIDYRNYPQGTMSNMVEDASGGISFVCNKIAEYGGDPNRVYLMGQSAGAHIAACALVEQAIKEAGEGGSTTWSV LQIKTYFGLSGGYNLFNLVDYFHSRGLYRSIFLSIMEGEESLRRFSPEVIVQDPNLKKAVSLLPPIVLFHGTADYSIPADSSKSFAETLQSVGVRAESIL YEGKTHTDLFLQDPMRGGNDRMFEDLVSIIHSDDREAQAKDEVAPPRRRLVPEFMLQLAHRVSPF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Potri.010G132200 [exp]	0	1
AT5G61910			DCD (Development and Cell Deat...		Potri.012G108200 [exp]	4.12	0.6749	Pt-BON1.3
AT1G68670	GARP		myb-like transcription factor ...		Potri.008G117500 [exp]	4.89	0.6709
AT1G73150		GTE3	global transcription factor gr...		Potri.001G285700 [exp]	5.29	0.6394	GTE906
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Potri.014G018000 [exp]	10.24	0.6489
AT3G47550			RING/FYVE/PHD zinc finger supe...		Potri.010G169200 [exp]	12.00	0.6123
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G108500 [exp]	14.66	0.6170
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.006G116700 [exp]	14.69	0.6034
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Potri.006G219500 [exp]	18.16	0.5952	Pt-GPA1.2
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Potri.002G079100 [exp]	39.87	0.5952
AT2G43210			Ubiquitin-like superfamily pro...		Potri.007G123800 [exp]	40.29	0.5805

Compare expression of checked genes

Potri.010G132200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.