Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68740 1139 / 0 PHO1;H1 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G23430 728 / 0 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) AT1G26730 438 / 9e-143 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G14040 438 / 5e-142 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 434 / 4e-141 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 431 / 3e-139 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 427 / 1e-138 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 425 / 2e-137 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 409 / 1e-130 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 403 / 4e-129 EXS (ERD1/XPR1/SYG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G110800 [exp] 1432 / 0 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G069000 [exp] 775 / 0 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G169400 [exp] 764 / 0 AT3G23430 1019 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G090400 [exp] 467 / 2e-153 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 458 / 1e-149 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 449 / 2e-146 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 448 / 5e-146 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 445 / 5e-145 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 395 / 6e-126 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019155 [exp] 1182 / 0 AT1G68740 1065 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10034400 [exp] 1181 / 0 AT1G68740 1057 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10021164 [exp] 796 / 0 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10011799 [exp] 770 / 0 AT3G23430 1080 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10030439 [exp] 436 / 3e-141 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036779 [exp] 429 / 1e-138 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 423 / 4e-136 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10026623 [exp] 415 / 3e-133 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 395 / 2e-125 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 366 / 7e-115 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [poplar] [flax] SPX SPX domain CL0182 [poplar] [flax] IT PF03124 [poplar] [flax] EXS EXS family
Representative CDS sequence Show only first row Show all	>Potri.010G132300.4 pacid=42796927 polypeptide=Potri.010G132300.4.p locus=Potri.010G132300 ID=Potri.010G132300.4.v4.1 annot-version=v4.1 ATGGTGAAGTTCTCTAAGCAGTTTGAGGGTCAGCTCGTGCCTGAATGGAAAGAGGCTTTTGTTGATTACTGGCAGCTCAAGGAAGACCTCAAGAAAATCC ATCTCCTCAACAACAACAGCAACCACCCCATCAAGCACAGTCATCACAACTCTTTATCCAGCAACATCCTTTCCTCTCTCAAGGAGTTCTCTTTATTTGG TCATCAACATAAGGACCACGAAGCCATTCATGTTCATAAGAAACTTGCATCTTCAGCTAGTAAAGGCGATTTGTATGAGACAGAACTGCTTGAGCAGTTT GAGGATAGTGATGCTGCCAAAGAGTTTTTCTCATGTTTGGACCTACAACTTAACAAAGTTAACCAATTTTTCAAGACTAAGGAGAAGGAGTTCTTGGATA GGGGGGATTGCTTAAGGAAACAAATGGAGATTCTTGTCGAGCTCAAATCTGCATTCAAAAAGCAGCGTGACAAAGCTGCTAATTCTTCTCAGGATTCCAC TGAGGATGCCTCTATTGATTGCACCATTTCTTATGAGGAAGATTCTGTGAAAGACAGAAGAGAACAAGAGCAGATTCAAGACGACAGCACAGGTGAGCTG GAGAAAAATGAAGTCCTGGACTCCCCAAGATCAGAAGAGATGGGGGAGATGGGAAAATCAATGAGGATGAAAAGAGACGATATCAAACTGAGGACACTTT CGGGCCACGTTTTCAATTGCCAGGGGAAGAATTTAAGGATAAACATTCCTCTAACAACACCTTCTCGTACTTTCTCGGCGATCAGTTATCTAGTTTGGGG AGATTTAGTTAGTCAGTCCTCCAAGAAATGCAACCCTGAAGGGAGCAAGCTGCATATCAACAAAACAAAGTTGCATCATGCAGAGAAGATGATTAAAGGA GCTTTCATAGAGCTCTACAAAGGGTTGGGATATCTCAAAACTTACAGGAACTTGAACATGCTTGCTTTTATAAAGATTTTGAAGAAGTTTGATAAAGTAA CTGGAAAACAAGTTCTTCCCATCTATCTAAAAGTTGTTGAAAGCTCCTATTTTAACAGTTCAGACAAGGTAATGAACTTAGCAGATGAAGTTGAGGATCT ATTTATCAAACATTTCGCTGAAGAAGACAGAAGAAAGGCCAGAAAATATCTTAAACCTCATCAACATACAGAATCACACTCTGTGACCTTTTTCATCGGA CTGTTCACTGGGTGCTTCATAGCCCTCTTCGTTGGTTATGTCATAATGGCTCATATCACGGGGATGTACAGACGGCAGCCAGATACTGTGTACATGGAAA CTGTCTATCCTGTGCTTAGCATGTTCACCTTGATGTTCCTGCACTTCTTTCTGTATGGTTGCAACATTTTCATGTGGAGGAAAGCCAGGATAAATTATAG CTTCATCTTTGAGCTGGGCCCTACAAAGGAGCTGAAGTACAGAGATGTATTCTTGATTTGCACCACATCGATGACTGCTGTAGTGGGAGTCATGTTTATT CATTTGTCACTTCATATCAAAGGACACTCGTTTTCCCAAGTTCAAGTCATCCCAGGCCTTCTGTTATTGAGCTTCATGTTATTGCTTGTGTGCCCCTTCA AGATTTGCTACCGCTCAAGTCGTTTTCGCTTCCTTTGTGTGCTAAGGAACATCGTTCTATCACCTCTCTATAAGGTTGTCATGCTGGACTTCTTTATGGC CGATCAACTTTGCAGTCAGGTGCCAATGCTTAGGAACCTTGAGTATGTAGCATGCTATTATTTAACTGGAAGCTACAAAAATCAGGACTATGGCTACTGC ATGAGGGCCAAGCATTTCCGCGATCTTGCTTATGCAGTGTCGTTCCTACCCTATTACTGGAGAGCAATGCAGTGTGCTAGGCGATGGTTTGATGAAGGAC AGACAAGCCACCTTGTCAATCTAGGCAAATATGTATCGGCAATGTTAGCAGCTGGAGCCAAAGTGGCCTACGAGAAAGAAAGGAGTATTGGATGGCTGTG CCTTGTTGTAGTTGTCTCAAGTGCTGCAACAATATACCAATTGTATTGGGACTTTGTAAAGGATTGGGGTTTGCTCCAGATCAATTCAAAGAATCCCTGG CTAAGGAATGAATTAATGCTTCGTCAGAAGTTCATTTACTACTTCTCCATGGGATTGAACCTTATTCTCAGGCTTGCTTGGCTACAAACTGTTCTCCATT CAAACTTTGAGCATGTTGATTACAGAGTAACTGGACTATTTTTAGCTTCCCTTGAAGTCATTAGGAGAGGACAGTGGAATTTTTACAGGTTGGAGAATGA GCATCTAAATAACGCTGGCAAGTTTAGAGCAGTTAAGACAGTGCCACTTCCTTTTCATGAAGTGGACGAGGAAGACTGA
AA sequence Show only first row Show all	>Potri.010G132300.4 pacid=42796927 polypeptide=Potri.010G132300.4.p locus=Potri.010G132300 ID=Potri.010G132300.4.v4.1 annot-version=v4.1 MVKFSKQFEGQLVPEWKEAFVDYWQLKEDLKKIHLLNNNSNHPIKHSHHNSLSSNILSSLKEFSLFGHQHKDHEAIHVHKKLASSASKGDLYETELLEQF EDSDAAKEFFSCLDLQLNKVNQFFKTKEKEFLDRGDCLRKQMEILVELKSAFKKQRDKAANSSQDSTEDASIDCTISYEEDSVKDRREQEQIQDDSTGEL EKNEVLDSPRSEEMGEMGKSMRMKRDDIKLRTLSGHVFNCQGKNLRINIPLTTPSRTFSAISYLVWGDLVSQSSKKCNPEGSKLHINKTKLHHAEKMIKG AFIELYKGLGYLKTYRNLNMLAFIKILKKFDKVTGKQVLPIYLKVVESSYFNSSDKVMNLADEVEDLFIKHFAEEDRRKARKYLKPHQHTESHSVTFFIG LFTGCFIALFVGYVIMAHITGMYRRQPDTVYMETVYPVLSMFTLMFLHFFLYGCNIFMWRKARINYSFIFELGPTKELKYRDVFLICTTSMTAVVGVMFI HLSLHIKGHSFSQVQVIPGLLLLSFMLLLVCPFKICYRSSRFRFLCVLRNIVLSPLYKVVMLDFFMADQLCSQVPMLRNLEYVACYYLTGSYKNQDYGYC MRAKHFRDLAYAVSFLPYYWRAMQCARRWFDEGQTSHLVNLGKYVSAMLAAGAKVAYEKERSIGWLCLVVVVSSAATIYQLYWDFVKDWGLLQINSKNPW LRNELMLRQKFIYYFSMGLNLILRLAWLQTVLHSNFEHVDYRVTGLFLASLEVIRRGQWNFYRLENEHLNNAGKFRAVKTVPLPFHEVDEED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68740		PHO1;H1	EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G132300 [exp]	0	1
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.006G060200 [exp]	5.47	0.7229
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Potri.003G018800 [exp]	6.70	0.7148	Pt-AKT2.1
AT5G18140			Chaperone DnaJ-domain superfam...		Potri.013G058100 [exp]	7.34	0.7696
AT3G59910			Ankyrin repeat family protein ...		Potri.007G146500 [exp]	12.32	0.7658
AT3G45600		TET3	tetraspanin3 (.1)		Potri.009G015100 [exp]	22.13	0.7033
AT2G37900			Major facilitator superfamily ...		Potri.016G103500 [exp]	28.72	0.6898
AT1G62400		HT1	high leaf temperature 1, Prote...		Potri.004G001900 [exp]	32.00	0.7214
AT3G12620			Protein phosphatase 2C family ...		Potri.016G082800 [exp]	33.46	0.6526
AT4G03020			transducin family protein / WD...		Potri.010G026800 [exp]	36.52	0.6639
AT1G09530	bHLH	PIF3, POC1, PAP...	PHOTOCURRENT 1, PHYTOCHROME-AS...		Potri.013G001300 [exp]	36.74	0.6825

Compare expression of checked genes

Potri.010G132300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.