Plant FIBer expression Database

Potri.010G132500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G111000
[exp]
63 / 1e-11 AT1G68725 / arabinogalactan protein 19 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G132500.1 pacid=42798909 polypeptide=Potri.010G132500.1.p locus=Potri.010G132500 ID=Potri.010G132500.1.v4.1 annot-version=v4.1
ATGGCTTCGGTGCTTTGGGCTCTCATCTTGGCATGTCTGAGTTTCCCACTAGCTATTACTGATGCCCAAACACCAGCTGTTTCGCCATCAACACCTACAA
CCACCACACCTCCACCCACAACCACACCAACCACTCCAACACAATCACCAGCAAGTGCAGTGACACCCCCAACTGCAACCACTCCTATATCATCACCATC
TCCTAAAGTCGCACCAGCTACCACCCCAGTAGTTCCACCACCACAACCACCACAAAGTTCTCCAGCTGCCACTCCAATACCACCACCAGCTACACCGCCA
CCACAAGTGTCTCCAGCACCAGCTCCAGCAACACCACCACCAGCACCAGCTCCAGCTAAGGAAGTACCTGCACCCGCACCAGCAACACCACCACCGGCAC
CTGTGCCAGCACCAGCTATTCCACCACCAGCCCCCTCACCATCATTAGTGCCTTCCCCAGCACCAGCTCCTGGAAAACACAAGATGAAAAGAAAACACAA
GCACAAGCATCATCATCATGCACCAGCTCCTGCACCAAACCCCCCCAGCCCCCCAGCCCCACCTACAGTGACAACAGCATCTGAGGACACAGCTCCTGCA
CCATCCCCAAATGGAGGAAATACATTGTATCACCAGGAAGGAAGGGCAAGAATGTGGGCAAGAATGTGGGCAAGGACAGTGTTAGCATTTGCCTCTCTGC
TGGTTGTTACAGGCTACAGTTTCTAG
AA sequence
>Potri.010G132500.1 pacid=42798909 polypeptide=Potri.010G132500.1.p locus=Potri.010G132500 ID=Potri.010G132500.1.v4.1 annot-version=v4.1
MASVLWALILACLSFPLAITDAQTPAVSPSTPTTTTPPPTTTPTTPTQSPASAVTPPTATTPISSPSPKVAPATTPVVPPPQPPQSSPAATPIPPPATPP
PQVSPAPAPATPPPAPAPAKEVPAPAPATPPPAPVPAPAIPPPAPSPSLVPSPAPAPGKHKMKRKHKHKHHHHAPAPAPNPPSPPAPPTVTTASEDTAPA
PSPNGGNTLYHQEGRARMWARMWARTVLAFASLLVVTGYSF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G68725 AGP19, ATAGP19 arabinogalactan protein 19 (.1... Potri.010G132500
[exp]
0 1
AT5G67230 IRX14-L, I14H IRREGULAR XYLEM 14-LIKE, IRREG... Potri.007G047500
[exp]
4.79 0.9372
AT5G15050 Core-2/I-branching beta-1,6-N-... Potri.004G130300
[exp]
8.00 0.9136
AT1G09610 Protein of unknown function (D... Potri.004G226800
[exp]
9.64 0.9193
AT5G60490 FLA12 FASCICLIN-like arabinogalactan... Potri.015G129400
[exp]
9.79 0.9220 Pt-FLA14.7
AT1G22760 PAB3 poly(A) binding protein 3 (.1) Potri.002G062700
[exp]
12.40 0.8482 PAB3.1
AT2G28315 Nucleotide/sugar transporter f... Potri.009G011100
[exp]
13.19 0.9167
AT2G38360 PRA1.B4 prenylated RAB acceptor 1.B4 (... Potri.006G104400
[exp]
14.45 0.9047
AT5G18520 Lung seven transmembrane recep... Potri.016G081300
[exp]
15.81 0.9170
AT4G10840 Tetratricopeptide repeat (TPR)... Potri.001G087800
[exp]
15.87 0.8993
AT3G53520 ATUXS1, UXS1 UDP-glucuronic acid decarboxyl... Potri.016G080500
[exp]
16.24 0.9031

Potri.010G132500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.