Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68710 1754 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G26130 1700 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT3G25610 1697 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G13210 1690 / 0 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT3G27870 1524 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 1361 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G17500 1355 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 1347 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 1321 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G59820 1016 / 0 ALA3 aminophospholipid ATPase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G111200 [exp] 2355 / 0 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.012G058000 [exp] 1712 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 1491 / 0 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G197500 [exp] 1332 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G043300 [exp] 1332 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G081200 [exp] 1225 / 0 AT1G17500 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G039900 [exp] 1011 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G191400 [exp] 1001 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.006G109200 [exp] 682 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019152 [exp] 1764 / 0 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035069 [exp] 1692 / 0 AT3G25610 1783 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035068 [exp] 1588 / 0 AT1G68710 1677 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10022238 [exp] 1534 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008776 [exp] 1362 / 0 AT3G27870 1540 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006881 [exp] 1349 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008473 [exp] 1348 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 1337 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006017 [exp] 1286 / 0 AT1G17500 1851 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10013286 [exp] 1012 / 0 AT1G59820 2015 / 0.0 aminophospholipid ATPase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase CL0137 [poplar] [flax] PF16209 [poplar] [flax] PhoLip_ATPase_N Phospholipid-translocating ATPase N-terminal CL0137 [poplar] [flax] PF16212 [poplar] [flax] PhoLip_ATPase_C Phospholipid-translocating P-type ATPase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.010G132700.1 pacid=42797034 polypeptide=Potri.010G132700.1.p locus=Potri.010G132700 ID=Potri.010G132700.1.v4.1 annot-version=v4.1 ATGGCTGGTGGTGGTAAAAGGAAGAGGTTGAGTCTGAGCAAACTGTACTCGTTTGCATGTGGAAAGACATCTTTAAAGGGTGATCAGTCCCAGATGGGGG CACCTGGGTTTTCCAGGGTAGTTCACTGCAATGAACCAGACTGTTTTGAGGCCAAGATTAGAAGATATAGTGGCAACTATGTTAGTACTACAAAGTACAA TGTTGCTACTTTCTTGCCCAAATCATTGTTTGAGCAGTTCAGAAGAGTGGCTAACTTCTATTTCTTGGTTGTGGGTATCTTGGCTTTCACCCCTCTTGCA CCTTACACAGCTGTCAGTGCTATTTTCCCCCTTATTGTTGTTGTTGGAGCTACCATGGTTAAAGAAGGTATTGAAGATTGGAAGAGAGCTCAGCAGGATA TCGAGATGAACAATAGAAAAACTAGAGTGCACCAGGGTGATGGAACTTTCAAATCTACTGGATGGAAGAATCTGAGGGTGGGAGACATAGTGAAGGTGAA GAAGGATGAATACTTTCCAGCAGACCTCCTCTTGCTCTCATCAACTTTTGAAGATGGAATCTGCTATGTTGAGACCATGAATCTAGATGGAGAAACAAAT TTGAAACTCAAACAGGCATTGGAGGCAACAGCATTCATGCACGAGGACTCTTACTATAGGGATTTCAAGGCTCTTATCAAATGTGAAGACCCAAATACAA ATTTGTACTCCTTCGTTGGCACTCTGGACTTTGAACAGAACCTGTATCCCCTCTCTCCTCAACGGCTTCTCCTCAGAGACTCCAAACTCAGAAATACAGA GTATATATATGGGGCAGTTATCTTCACTGGACATGACACAAAGGTTATGCAAAATTCTACAGCTCCCCCTTCAAAGAGAAGCAAATTTGAGAAGCAGATG GATAAAATTGTTTACTTCTTATTCTTTGTTCTATTTATGATGGCATTTATTGGATCTCTTGTTTTCGGAGTTGCAACTGACAATGACTTGGATGGAGGGA GGATGAAAAGGTGGTATCTCAAACCAGATGAGTCTACTGTTTACTTTGACCCTAAAAGAGTGGTCTTAGCATCAATTTGTCACTTTCTGACTGCTCTCAT GTTGTACAATTACTTCATCCCAATCTCCCTGTACGTGTCAATTGAAGTCGTCAAAGTTTTTCAGAGCAGTTTCATCAACAACGATATCAATTTGTACTAT GAGCCATCTGACAGGCCAGCACATTCTCGCACCTCAAATTTGAATGAGGAACTTGGGCAAGTGGACACGATACTTTCTGACAAGACTGGAACATTGACCT GCAATTCCATGGAGTTCATCAAGTGTTCTGTCGCGGGGACTGCTTATGGCCATGGGGTTACAGAGGCTGAGCGGGGAATGGGTGTGAGAGAAGGTGAAAG TGTGAATGGTTGGGACCAGAGCAAGGATTCTTCCACTACAAAACCGCACATTAAAGGTTTCAATTTTAAAGATGAAAGGATTATGGATGGGAACTGGGTC CATGAACCCCAAGCTAACATCATTGAAAATTTTTTCCTCTTGTTGGCAATCTGTCACACTGCCATACCTGATGTGGATGAAGAAACGGGGAAGATTTCAT ACGAAGCTGAATCACCAGATGAAGCAGCATTTGTGATTGCTGCAAGAGAAATTGGTTTTGAATTCTACAAAAGGACTCAAACAAGCGTTGCAGTGCGTGA GTACAATCCAAAGACTGGGAAGAAAGTTGAAAGGGTGTATACAGTTCTGAATGTTTTGGAGTTTAACAGTGCAAGAAAGCGGATGTCTGTGATAGTAAGA AATGAGGAGGGGAAACTGCTATTACTTTGTAAAGGTGCTGACAGTGTCATGTTTGAAAGGCTTGCTAAGAGTGGAAGGGGGTTTGAAGAGGAGACCAAGA ATCATGTGAATGACTATGCTGATTCTGGCCTGAGGACCCTAATACTTGCCTATCGTGAACTTGCTGAAGAAGAATACAAAATTTTTAACCAGAAATTCAC CGAGGCTAAGAATTCAGTTAGTGCAGATCGGGAAACATTGATTGATGACATGGCAGAGAAGATCGAGAGGAATCTAGTTCTTCTTGGCGCAACTGCTGTT GAGGATAAACTCCAAGAAGGGGTTCCTGCCTGCATAGACAAACTTGCTCAAGCTGGAATTAAGATGTGGGTTTTGACTGGAGACAAAATGGAGACTGCCA TAAACATTGGCTTCTCCTGTTGTTTGCTTAGACAAGGAATGAAGCAGATCATAATCAATTTGGAGAATCCAGAGATCCTGTCATTGGAAAAAACAGGAAA CAAGGATGCCATTACTAAGGCATCAAGGGAAAGTGTTCTTCGTCAAATAACTGATGGAACGGCCCTGCTTACTGGACCAAGTGGAACTGCTGAGACATTT GCATTGATAATTGATGGAAAATCACTCGCTTACGCATTAGAGGATGACATGAAACATTTGTTTCTAGATCTTGCTATGAGTTGTGCATCTGTCATTTGTT GCCGTTCATCACCAAAACAGAAAGCACTGGTTACAAGACTAGTCAAATCTGGAACCAGGAAAACAACATTAGCAATTGGTGATGGTGCCAATGACGTGGG TATGCTTCAAGAAGCAGATATTGGAGTCGGAATCAGTGGTGTTGAAGGAATGCAGGCTGCCATGGCAAGTGATGTTGCAATTGCTCAGTTTCGGTATTTG GAGCGTTTACTACTTGTACATGGGCATTGGTGTTACAGGAGGCTCTCATCTATGATATGCTATTTCTTCTACAAGAACATTGCCTTTGGTTTCTCCATTT GGCTATATGAGGCTTATACATCATTTTCTGCACAGTCTGTATACGGTGATTGGTTTTTGTCATTTTATAATGTCTTCTTCACGGCTCTTCCAGTTGCCGC TTTGGGTATCTTTGAACAAGATGTATCTGCTGCAAGCTGTCTCAAGTATCCTCTACTATACCAAGAAGGCGTGAAAAATCTCCTCTTTGGGTGGCGCCGA GTACTTCATTGGCTGGGTAACGGGTTCTATACTGCACTAGTCGTTTTCTTCTTCTGCTCAACTGCACTGCAGCACCAAGCCTTCAACCGTGATGGAAAAA CTGTTGGGATGGATGTTTTAGGAGGAACCATGTATACTTGCATCGTGTGGGCTGTGAACTTGCAGATGGCATTGACTGTTTGTTACTTCACCAAAATACA GCGTGGCCTAATTATATATTGTCTTTGTATGTTGTACATTTTCTTCATGGGATTTGGGTCCCTGTCTCCGTCAATGTCTGCAATTGGCTACAAACTCTTT ACAGAAGCCCTTGCCCCGGCTGCTTCTTACTGGTTTACAATCATATTTGTGATAATCGCAGCACTGTTGCCCTTCTATGCATATTCAGCAATTGAAACAA GGTTCTTTCCCATGTACCACCAGATGATACAAAGGTTAGAGAGTGGGAAACATGAAGATGATCCTGAGTATTGTGATATGATGCGACAAAAGTTATTGCA GCCACCAACATCAGTAGGTTTTTCAGCACGGTTGGCAGCACGAGCTAATAAGTTAAGGCGTAAGAATAAGAATCAGCCACAATAA
AA sequence Show only first row Show all	>Potri.010G132700.1 pacid=42797034 polypeptide=Potri.010G132700.1.p locus=Potri.010G132700 ID=Potri.010G132700.1.v4.1 annot-version=v4.1 MAGGGKRKRLSLSKLYSFACGKTSLKGDQSQMGAPGFSRVVHCNEPDCFEAKIRRYSGNYVSTTKYNVATFLPKSLFEQFRRVANFYFLVVGILAFTPLA PYTAVSAIFPLIVVVGATMVKEGIEDWKRAQQDIEMNNRKTRVHQGDGTFKSTGWKNLRVGDIVKVKKDEYFPADLLLLSSTFEDGICYVETMNLDGETN LKLKQALEATAFMHEDSYYRDFKALIKCEDPNTNLYSFVGTLDFEQNLYPLSPQRLLLRDSKLRNTEYIYGAVIFTGHDTKVMQNSTAPPSKRSKFEKQM DKIVYFLFFVLFMMAFIGSLVFGVATDNDLDGGRMKRWYLKPDESTVYFDPKRVVLASICHFLTALMLYNYFIPISLYVSIEVVKVFQSSFINNDINLYY EPSDRPAHSRTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGHGVTEAERGMGVREGESVNGWDQSKDSSTTKPHIKGFNFKDERIMDGNWV HEPQANIIENFFLLLAICHTAIPDVDEETGKISYEAESPDEAAFVIAAREIGFEFYKRTQTSVAVREYNPKTGKKVERVYTVLNVLEFNSARKRMSVIVR NEEGKLLLLCKGADSVMFERLAKSGRGFEEETKNHVNDYADSGLRTLILAYRELAEEEYKIFNQKFTEAKNSVSADRETLIDDMAEKIERNLVLLGATAV EDKLQEGVPACIDKLAQAGIKMWVLTGDKMETAINIGFSCCLLRQGMKQIIINLENPEILSLEKTGNKDAITKASRESVLRQITDGTALLTGPSGTAETF ALIIDGKSLAYALEDDMKHLFLDLAMSCASVICCRSSPKQKALVTRLVKSGTRKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAAMASDVAIAQFRYL ERLLLVHGHWCYRRLSSMICYFFYKNIAFGFSIWLYEAYTSFSAQSVYGDWFLSFYNVFFTALPVAALGIFEQDVSAASCLKYPLLYQEGVKNLLFGWRR VLHWLGNGFYTALVVFFFCSTALQHQAFNRDGKTVGMDVLGGTMYTCIVWAVNLQMALTVCYFTKIQRGLIIYCLCMLYIFFMGFGSLSPSMSAIGYKLF TEALAPAASYWFTIIFVIIAALLPFYAYSAIETRFFPMYHQMIQRLESGKHEDDPEYCDMMRQKLLQPPTSVGFSARLAARANKLRRKNKNQPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68710			ATPase E1-E2 type family prote...		Potri.010G132700 [exp]	0	1
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.002G187400 [exp]	1.41	0.9264
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025800 [exp]	3.46	0.8950
AT5G38260			Protein kinase superfamily pro...		Potri.017G117340 [exp]	3.87	0.9071
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.009G169900 [exp]	5.29	0.9110
AT1G27100			Actin cross-linking protein (....		Potri.004G130200 [exp]	7.00	0.8902
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270500 [exp]	9.38	0.8730
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G013100 [exp]	10.24	0.8979
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211700 [exp]	11.74	0.8623
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.001G106800 [exp]	12.00	0.9019
AT3G59080			Eukaryotic aspartyl protease f...		Potri.005G204600 [exp]	12.72	0.8320

Compare expression of checked genes

Potri.010G132700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.