Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26150 602 / 0 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT1G68690 598 / 0 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT5G38560 540 / 0 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G70460 464 / 2e-153 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 464 / 2e-153 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G10620 453 / 2e-149 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT3G24550 441 / 2e-145 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G52290 417 / 4e-138 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT4G34440 422 / 7e-138 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT2G18470 415 / 2e-135 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G111600 [exp] 731 / 0 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 571 / 0 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.004G105200 [exp] 566 / 0 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.008G189700 [exp] 469 / 3e-155 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.018G081300 [exp] 453 / 8e-150 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.005G124400 [exp] 427 / 7e-141 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.007G027000 [exp] 419 / 2e-137 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.001G183000 [exp] 409 / 3e-134 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.003G053301 [exp] 405 / 1e-132 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017898 [exp] 573 / 0 AT1G68690 631 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10003066 [exp] 553 / 0 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10034082 [exp] 550 / 0 AT5G38560 700 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10035071 [exp] 538 / 0 AT1G68690 570 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10029151 [exp] 449 / 3e-151 AT1G23540 575 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10013014 [exp] 448 / 5e-151 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10011098 [exp] 449 / 2e-148 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10013013 [exp] 447 / 3e-146 AT1G70460 596 / 0.0 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) Lus10023645 [exp] 439 / 5e-144 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 435 / 3e-143 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.010G132900.1 pacid=42800078 polypeptide=Potri.010G132900.1.p locus=Potri.010G132900 ID=Potri.010G132900.1.v4.1 annot-version=v4.1 ATGGCAACTGTATCTCCATCCCCAAATTCACCCCCCTCTGCTACTCCACCACCTTTAAACGGTACACCACCACCATCCTCTACTAGTTCACCACCACAAG CCTCCTCTCCTCCTCCCACTTCCCCACCTTCACAGCCCAATGCCAATCCACCAGACCCAAGAACCCCTCCTGCTCCATCACCACCACCCCAAACCCCTCC TCCTACTGTTTCTAATCCTCCTCCTGCCACACCATCAACCCCTCCACCACAACCACCACCTCCTATGACATCACGTTCTCCGCCTTTATCCAGTAGTGAT CCTCCATCAAACTCCAATTCTCCTCCACCACTATCAGCAACTCCGCCTGTGAGCTCACCTCCACCACCACCACCATCTAATCCACCATCAACTGCACCTC CACCACCACTGTTGAATCCACCTACAAGTTCCTCTCCACCATCACCATCAACAACACCACCTCAAAATTCTCCACCACCATCATCGACACCTCCACCTCA AAGTTCATCTCCATCACCGCCTCAAATCTCATCTCCACCACCACCATCATCACCGCCACCTCAGAGTTCACCTCCACCACCATCTCTGCCACCTCAGAGT TCACCTCCACCACCATCAACACCGCCACCTCAGAGTTCACCTCCATCACAACCCTCATCTAGGCCACCTCAAAATTCACCACCACCACCTCCTCCGACCC CCCCACCAGCATCCTTGCCACCTCCTCGAAGATCACCTCCACCACCAGCATCAACTCCACCTGAGAATTCACCACGTCCACCAATTTCAATAGCCCCTCG TCCCAGTAATGTGCCCCCACCTCCTAGGCTTACTCCTCCAACTTCTCCTCAAGCAACACCTGTCCCATCAGATTCCAATCCACCAGCATTGTCACCGCCA AAAATAAGATTGGCTCCGCCTCCACGCGCACTTGTTTCCCCGCCATCACCCACGAACAATACCGCCCCTAATTCACCTGGAAGTTCAAACTCCACAGGTA ATGGGGGCATCGGTACTGGAGGTATGGTGGCTATTGGTGCAGCAATAGGAATTATAATGCTCAGCCTTGTTGGACTGGCTCTCTGGTGCATGAGGAGGCG GCGAAAAGAGATTTCTGGACTCAATGGTGTTTATGTTATGCCATCTTCTTTGGGCTCTTCTCCAAGATCAGGTTCAACTTTCACAAAGACTCATTCTACG GCTCCCCTAATTGCAAGTGGTTCTAGCAGTGATTGTGTTTCTTTGCCAACTGAATCAAGCGGATTAGGTAATTCAAGGCCTTTGTTTGCGTTTGAAGAGC TAGTCAAGGCGACAAATGGGTTTTCATCCCAAAACCTTTTGGGAGAAGGTGGATTTGGTTCTGTATACAAAGGTTACCTTCCAGATGGGAGAGATGTGGC AGTGAAACAGCTAAAAATTGGTGGAGGGCAAGGTGAGCGAGAATTTAAAGCTGAAGTTGAGATTATTAGTCGCGTACACCACCGCCATTTGGTTTCTCTT GTGGGCTACTGCATATGTGAGACCCGAAGATTGCTCGTATATGATTATGTCCCTAACAATACCCTTTATTTCCATCTTCACGGGGTGGGTGGGCTGGCTC TGGATTGGGCAACACGTGTTAAGATTGCTGCTGGAGCAGCTCGGGGAATAGCTTATCTCCATGAAGACTGTCATCCTCGGATTATTCACAGGGATATTAA GTCGTCAAATATTCTCTTAGATAACAACTATGAAGCTAAGGTTTCAGACTTTGGGCTTGCCAAATTAGCTCTTGATTCAAACACTCATGTAACAACTCGT GTTATGGGAACCTTTGGATACATGGCCCCTGAATATGCATCAAGCGGCAAATTAACAGAGAAATCTGATGTATTCTCATATGGAGTTGTGCTTTTGGAGC TAATCACTGGACGGAAGCCTGTGGATGCATCCCAGCCCATGGGAGAGGAGAGTCTTGTTGAATGGGCTCGACCTTTGCTAAATCATGCACTAGAAAATGA GGAACTTGAAAGTTTGGCAGATCCAAGGCTTGAAAAGAACTACATTGAAAGCGAAATGTTCCGGATGATTGAGGCTGCTGCGGCCTGTGTGCGGCATTCA GCTTCTAAGAGGCCACGGATGGGACAGGTTGTTAGAGCTTTTGATACTTTAGCGATAGCAGATCTAACCAACGGAATGAGAGTGGGAGAAAGTGAGCTAT TCAACTCTGCACAACAATCTGAAGAAATTAGACTGTTTCGAAGGATGGCATTTGGTAGTCAAAATTACAGTATAGATTGTTATAGCCTGGATAATTAA
AA sequence Show only first row Show all	>Potri.010G132900.1 pacid=42800078 polypeptide=Potri.010G132900.1.p locus=Potri.010G132900 ID=Potri.010G132900.1.v4.1 annot-version=v4.1 MATVSPSPNSPPSATPPPLNGTPPPSSTSSPPQASSPPPTSPPSQPNANPPDPRTPPAPSPPPQTPPPTVSNPPPATPSTPPPQPPPPMTSRSPPLSSSD PPSNSNSPPPLSATPPVSSPPPPPPSNPPSTAPPPPLLNPPTSSSPPSPSTTPPQNSPPPSSTPPPQSSSPSPPQISSPPPPSSPPPQSSPPPPSLPPQS SPPPPSTPPPQSSPPSQPSSRPPQNSPPPPPPTPPPASLPPPRRSPPPPASTPPENSPRPPISIAPRPSNVPPPPRLTPPTSPQATPVPSDSNPPALSPP KIRLAPPPRALVSPPSPTNNTAPNSPGSSNSTGNGGIGTGGMVAIGAAIGIIMLSLVGLALWCMRRRRKEISGLNGVYVMPSSLGSSPRSGSTFTKTHST APLIASGSSSDCVSLPTESSGLGNSRPLFAFEELVKATNGFSSQNLLGEGGFGSVYKGYLPDGRDVAVKQLKIGGGQGEREFKAEVEIISRVHHRHLVSL VGYCICETRRLLVYDYVPNNTLYFHLHGVGGLALDWATRVKIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDNNYEAKVSDFGLAKLALDSNTHVTTR VMGTFGYMAPEYASSGKLTEKSDVFSYGVVLLELITGRKPVDASQPMGEESLVEWARPLLNHALENEELESLADPRLEKNYIESEMFRMIEAAAACVRHS ASKRPRMGQVVRAFDTLAIADLTNGMRVGESELFNSAQQSEEIRLFRRMAFGSQNYSIDCYSLDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26150		ATPERK10	proline-rich extensin-like rec...		Potri.010G132900 [exp]	0	1
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Potri.007G054900 [exp]	9.89	0.7216
AT5G52390			PAR1 protein (.1)		Potri.009G040000 [exp]	16.73	0.8053
AT3G07600			Heavy metal transport/detoxifi...		Potri.009G048100 [exp]	21.35	0.8037
AT5G47530			Auxin-responsive family protei...		Potri.014G162000 [exp]	29.32	0.7886
AT2G47350			HIT zinc finger ;PAPA-1-like c...		Potri.014G119600 [exp]	34.78	0.7183
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Potri.002G256200 [exp]	46.95	0.7411
AT4G01550	NAC	ANAC069, NTM2	NAC with Transmembrane Motif 2...		Potri.002G181800 [exp]	47.90	0.7402
					Potri.019G014316 [exp]	51.11	0.7334
AT5G59100			Subtilisin-like serine endopep...		Potri.010G196700 [exp]	53.68	0.7686
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014370 [exp]	67.17	0.7224

Compare expression of checked genes

Potri.010G132900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.