Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-AAPT1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13560 695 / 0 AAPT1, ATAAPT1 aminoalcoholphosphotransferase 1 (.1.2) AT3G25585 672 / 0 AAPT2, ATAAPT2 aminoalcoholphosphotransferase (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G109833 [exp] 736 / 0 AT1G13560 684 / 0.0 aminoalcoholphosphotransferase 1 (.1.2) Potri.T031036 [exp] 732 / 0 AT1G13560 682 / 0.0 aminoalcoholphosphotransferase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034410 [exp] 476 / 2e-168 AT3G25585 509 / 0.0 aminoalcoholphosphotransferase (.1.2.3.4) Lus10019149 [exp] 473 / 1e-161 AT1G13560 477 / 7e-165 aminoalcoholphosphotransferase 1 (.1.2) Lus10002042 [exp] 91 / 8e-22 AT1G13560 81 / 4e-19 aminoalcoholphosphotransferase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01066 [poplar] [flax] CDP-OH_P_transf CDP-alcohol phosphatidyltransferase
Representative CDS sequence Show only first row Show all	>Potri.010G133800.2 pacid=42797700 polypeptide=Potri.010G133800.2.p locus=Potri.010G133800 ID=Potri.010G133800.2.v4.1 annot-version=v4.1 ATGCTTTTAATTTTTTGCTCTTTCCTAGAATCTGCACCCAAACCTAGCTGCTCTCCAAAAAAAAAAAAAAAAAAACAAAAAATCTCCAAATCCCTCTCGG TATCGCCATTCCCAACGGTACAATATTTTAAGCTTTCTTATTTTCATATCAAACAATTTCTGTTCAGATCTGTTGTTGTTTTTCTCAATTACAACAAGAA AAATCATCCCAGTTTCAGATCCATTTTTTCTTTCTCAGCTAGGTCAGAAAAAATGGGATATATAGGATCACATGGAATAGCAGCACTTCACAGGTACAAA TACAGTGGAGTAGATCACTCTTATGTTGCTAAATATGTTTTGCAACCCTTTTGGAGCCGTTGTGTTAACTTCTTCCCTCTTTGGATGCCACCGAACATGA TTACGCTTATGGGATTTATGTTCTTAGTGACTTCTGCTTTGCTCGGATATATATATTCACCTCGCTTGGATACGCCTCCACCAAGATGGGTTCATTTTGC GCATGGATTGCTTCTATTTTTATATCAGACTTTTGATGCTGTTGATGGAAAGCAAGCGCGGCGGACAAACTCGTCCAGTCCATTGGGGGAGCTTTTTGAC CATGGATGTGATGCGCTCGCTTGTGCATTTGAAAGCTTGGCTTTTGGTAGCACTGCCATGTGTGGAAGAGATTCTTTCTGGTTCTGGCTTATTTCAGCTG TGCCATTTTATGGTGCAACATGGGAACACTTTTTCACCAACACTCTCATTCTTCCAGCAGTTAATGGACCCACAGAGGGTCTGATGCTAATATATGTGGC ACATTTGTTTACAGCCTTAGTTGGTGCTGAGTGGTGGGTTCAACACTTTGGGATGTCTTTCCCATTCTTGAGTTGGGTGCCATTTGTAAGTGAAATCCAA ACTTACAGAGTCGTGCTGTTATTAATGACAGCTTTTGCTGTTATACCCACAGTGGCATTCAACGTGTCCAATGTCTACAAGGTTGTTCAAGCAAGAAAGA GCAGCATGTTAATGGCTTTAGCAATGCTTTACCCTTTTCTTGTGCTCGTTGGTGGGGTCCTAGTGTGGGATTATTTGTCTCCATCTGATCTAATGGCGAA TTATCCTCATTTGGTTGTATTGGGAACTGGACTTGCATTTGGGTTTCTTGTGGGAAGGATGATTCTGTCTCACCTGTGTGATGAACCAAAGGGATTGAAA ACCAACATGTGCTTGTCTCTGTTATATCTACCATTTGCCATCGCAAATGCACTCGCAGCCAGACTGAATGATGGAGTTGCTTTAGTGGATGAGTTCTGGG TTCTTCTTGGTTATTGTGTATTCACAATGCTACTCTATTTGCACTTCACCACATCTGTCATCCATGAAATTACAACAGCTCTGGGAATATGCTGCTTCAG GATAACTAGGAAGAAAGCATGA
AA sequence Show only first row Show all	>Potri.010G133800.2 pacid=42797700 polypeptide=Potri.010G133800.2.p locus=Potri.010G133800 ID=Potri.010G133800.2.v4.1 annot-version=v4.1 MLLIFCSFLESAPKPSCSPKKKKKKQKISKSLSVSPFPTVQYFKLSYFHIKQFLFRSVVVFLNYNKKNHPSFRSIFSFSARSEKMGYIGSHGIAALHRYK YSGVDHSYVAKYVLQPFWSRCVNFFPLWMPPNMITLMGFMFLVTSALLGYIYSPRLDTPPPRWVHFAHGLLLFLYQTFDAVDGKQARRTNSSSPLGELFD HGCDALACAFESLAFGSTAMCGRDSFWFWLISAVPFYGATWEHFFTNTLILPAVNGPTEGLMLIYVAHLFTALVGAEWWVQHFGMSFPFLSWVPFVSEIQ TYRVVLLLMTAFAVIPTVAFNVSNVYKVVQARKSSMLMALAMLYPFLVLVGGVLVWDYLSPSDLMANYPHLVVLGTGLAFGFLVGRMILSHLCDEPKGLK TNMCLSLLYLPFAIANALAARLNDGVALVDEFWVLLGYCVFTMLLYLHFTTSVIHEITTALGICCFRITRKKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13560		AAPT1, ATAAPT1	aminoalcoholphosphotransferase...		Potri.010G133800 [exp]	0	1	Pt-AAPT1.1
AT3G52990			Pyruvate kinase family protein...		Potri.006G117400 [exp]	4.00	0.7458
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Potri.005G054500 [exp]	5.29	0.7316
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Potri.010G253500 [exp]	7.21	0.7138
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Potri.002G252600 [exp]	13.03	0.6955	Pt-RPT2.2
AT2G30050			transducin family protein / WD...		Potri.010G100400 [exp]	13.41	0.6624
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Potri.008G130300 [exp]	20.12	0.6785
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Potri.007G080100 [exp]	21.21	0.5883
AT5G56350			Pyruvate kinase family protein...		Potri.001G001600 [exp]	21.35	0.6693
AT5G51570			SPFH/Band 7/PHB domain-contain...		Potri.015G130600 [exp]	27.92	0.5945
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.013G005600 [exp]	28.93	0.7174

Compare expression of checked genes

Potri.010G133800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.