Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SAMDC.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25570 478 / 3e-170 Adenosylmethionine decarboxylase family protein (.1.2) AT5G15950 461 / 2e-163 Adenosylmethionine decarboxylase family protein (.1.2) AT3G02470 456 / 2e-161 SAMDC S-adenosylmethionine decarboxylase (.1.3.4) AT5G18930 251 / 3e-81 BUD2, SAMDC4 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G108800 [exp] 522 / 0 AT3G02470 481 / 3e-171 S-adenosylmethionine decarboxylase (.1.3.4) Potri.004G106800 [exp] 506 / 0 AT3G02470 478 / 3e-170 S-adenosylmethionine decarboxylase (.1.3.4) Potri.018G101500 [exp] 349 / 9e-119 AT3G02470 358 / 2e-122 S-adenosylmethionine decarboxylase (.1.3.4) Potri.008G198800 [exp] 242 / 8e-78 AT5G18930 461 / 1e-163 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Potri.010G028500 [exp] 242 / 1e-77 AT5G18930 451 / 7e-160 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000156 [exp] 543 / 0 AT3G25570 486 / 3e-172 Adenosylmethionine decarboxylase family protein (.1.2) Lus10034412 [exp] 539 / 0 AT3G25570 481 / 3e-170 Adenosylmethionine decarboxylase family protein (.1.2) Lus10035083 [exp] 528 / 0 AT3G25570 473 / 2e-168 Adenosylmethionine decarboxylase family protein (.1.2) Lus10019146 [exp] 527 / 0 AT3G25570 478 / 3e-169 Adenosylmethionine decarboxylase family protein (.1.2) Lus10031919 [exp] 522 / 0 AT3G25570 470 / 4e-167 Adenosylmethionine decarboxylase family protein (.1.2) Lus10040973 [exp] 371 / 2e-127 AT3G25570 372 / 9e-128 Adenosylmethionine decarboxylase family protein (.1.2) Lus10021951 [exp] 231 / 2e-73 AT5G18930 361 / 3e-124 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Lus10041241 [exp] 223 / 2e-70 AT5G18930 363 / 2e-125 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01536 [poplar] [flax] SAM_decarbox Adenosylmethionine decarboxylase
Representative CDS sequence Show only first row Show all	>Potri.010G133900.1 pacid=42799188 polypeptide=Potri.010G133900.1.p locus=Potri.010G133900 ID=Potri.010G133900.1.v4.1 annot-version=v4.1 ATGGACCTGGCTGTTTCTGCAATCGGATTTGAAGGCTATGAAAAGAGGCTAGAAATCACTTATTTTGAGCCGGGCATCTTTGATGATCCTGAAGGGAAGG GCCTTCGATCTCTGTCAAAGCCTCAGTTGGATGAGATTCTTGGACCGGCCGAGTGCACCATTGTTGATTCGCTATCAAATGACTATGTGGACTCCTATGT CCTCTCTGAGTCTAGCCTCTTTGTATATCCTTACAAGATCATCATTAAGACCTGTGGGACTACAAAATTACTCCTTTCAATCCCAGCTATCCTGAAGTTG GCTGATACCCTTTCTCTAAATGTGAGATCTGTGAGGTATACTCGTGGGAGCTTCATTTTCCCTGGAGCTCAGTCCTATCCTCATCGCAGTTTCTCCGAAG AAATTGCTGTCCTGGATGGCTGCTTCGGCAAGCTTGGTTTGGCAAGCAAGGCTTACATAATGGGTGGTCTGGACAAACCACAGAAATGGCATGTTTACTC TGCATCTGCAGATTCGGCTCTCTCTCGTGACCTTATTTACACTATTGAGATGTGCATGACTGGCTTGGACAGGGAGAAGGCTTCTGTGTTTTACAAAACC CAATCATCTTCAGCAGCAGCAATGACTGATGATTCTGGAATAAGAAAGATTCTACCTGCCTCTAATATATGTGATTTTGAGTTCGAACCCTGTGGTTATT CCATGAATTCAATTGAAGGAGCTGCAATCTCTACCATCCATGTTACTCCGGAAGATGGTTTCAGTTATGCAAGCTTTGAAGCTGCAGGATATGATCTGAA AGATGCGAGCCTTAACCAGTTAGTTGATAGGGTGTTGGCTTGTTTCCAAGCAACCGAATTCTCCATTGCTGTGCATGCTGATGTTGCTGGAGAACAACTT GAGCGGATTTGTTCCCTGGATGTCAAGGGATACTGCCGTGGAGAGAGGAGCCATGGAGAGCTTGGTATGGGTGGTTCCATTATCTACCAGAAGTTTGTTA GGTCTGGGAATGCTGATTCTCCTAGATCAATCCTTAAATGCTGCTGGAAAGAGGAAGAAGATTATTAG
AA sequence Show only first row Show all	>Potri.010G133900.1 pacid=42799188 polypeptide=Potri.010G133900.1.p locus=Potri.010G133900 ID=Potri.010G133900.1.v4.1 annot-version=v4.1 MDLAVSAIGFEGYEKRLEITYFEPGIFDDPEGKGLRSLSKPQLDEILGPAECTIVDSLSNDYVDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPAILKL ADTLSLNVRSVRYTRGSFIFPGAQSYPHRSFSEEIAVLDGCFGKLGLASKAYIMGGLDKPQKWHVYSASADSALSRDLIYTIEMCMTGLDREKASVFYKT QSSSAAAMTDDSGIRKILPASNICDFEFEPCGYSMNSIEGAAISTIHVTPEDGFSYASFEAAGYDLKDASLNQLVDRVLACFQATEFSIAVHADVAGEQL ERICSLDVKGYCRGERSHGELGMGGSIIYQKFVRSGNADSPRSILKCCWKEEEDY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25570			Adenosylmethionine decarboxyla...		Potri.010G133900 [exp]	0	1	SAMDC.2
AT1G48600		AtPMEAMT	phosphoethanolamine N-methyltr...		Potri.012G047301 [exp]	1.73	0.6801
AT5G03250			Phototropic-responsive NPH3 fa...		Potri.016G090400 [exp]	3.74	0.6751
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Potri.005G198800 [exp]	9.16	0.6727	RAB7.1
AT2G43070		ATSPPL3	ARABIDOPSIS THALIANA SIGNAL PE...		Potri.014G150000 [exp]	13.56	0.6141
AT1G03990			Long-chain fatty alcohol dehyd...		Potri.002G259700 [exp]	17.83	0.6372
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Potri.002G225200 [exp]	18.97	0.6407
AT3G22510			Pre-rRNA-processing protein TS...		Potri.010G086800 [exp]	28.12	0.6212
AT3G59350			Protein kinase superfamily pro...		Potri.017G036300 [exp]	28.14	0.5723
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Potri.003G091500 [exp]	31.68	0.6443	Pt-BOU.2
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Potri.007G018000 [exp]	43.88	0.5982	Pt-TRXH.1,PtrTrxh4

Compare expression of checked genes

Potri.010G133900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.