Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13570 525 / 0 F-box/RNI-like superfamily protein (.1) AT5G56420 96 / 2e-21 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT4G10400 95 / 4e-21 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT3G03360 91 / 2e-19 F-box/RNI-like superfamily protein (.1) AT5G22610 88 / 1e-18 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G56690 87 / 2e-18 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT3G26920 86 / 3e-18 FBD / Leucine Rich Repeat domains containing protein (.1.2) AT5G22720 87 / 4e-18 F-box/RNI-like superfamily protein (.1.2) AT3G52680 85 / 1e-17 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT5G56400 85 / 1e-17 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G110400 [exp] 644 / 0 AT1G13570 419 / 2e-144 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 330 / 4e-110 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 314 / 9e-104 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 246 / 4e-77 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.011G024300 [exp] 92 / 3e-20 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.014G163866 [exp] 91 / 4e-20 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2) Potri.001G322900 [exp] 89 / 9e-19 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G121400 [exp] 88 / 9e-19 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G136200 [exp] 87 / 2e-18 AT1G56400 215 / 2e-64 F-box family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019144 [exp] 649 / 0 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10034414 [exp] 644 / 0 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10034415 [exp] 429 / 5e-151 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10030569 [exp] 200 / 2e-59 AT1G13570 183 / 5e-53 F-box/RNI-like superfamily protein (.1) Lus10030920 [exp] 199 / 3e-59 AT1G13570 179 / 1e-51 F-box/RNI-like superfamily protein (.1) Lus10041818 [exp] 169 / 8e-48 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10040760 [exp] 165 / 3e-46 AT1G13570 157 / 3e-43 F-box/RNI-like superfamily protein (.1) Lus10004852 [exp] 139 / 3e-36 AT1G13570 147 / 6e-39 F-box/RNI-like superfamily protein (.1) Lus10006346 [exp] 137 / 5e-36 AT1G13570 140 / 2e-37 F-box/RNI-like superfamily protein (.1) Lus10004851 [exp] 133 / 2e-34 AT1G13570 139 / 7e-37 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0022 [poplar] [flax] LRR PF07723 [poplar] [flax] LRR_2 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Potri.010G134200.4 pacid=42796990 polypeptide=Potri.010G134200.4.p locus=Potri.010G134200 ID=Potri.010G134200.4.v4.1 annot-version=v4.1 ATGGGAGATGTTGAGGATCCGGATCTGATAAGTGATCTGCCTCAGAGCATTCTGGAAAGCATCCTCACTCGATTACCAATAAGAGATGCTGTGAGAACAA GCATCTTGTCAAGTAAATGGAGGTATCGATGGACTACACTTACTCACCTTGTTTTCGATGACAAATGTATCAGGATGTGCAGTGATAGACCAGTGGTTGA GAACTGCATGGTCAACTTCATCACTCGGGCACTCTTTCTTCACCAAGGACCTATTCACAAGTTCCAGCTCTCTACTTCATATTTGCAATGCTGCCCGGAT ATTGATCAGTGGATACTTTTCCTCTCAAGGAGTGATATTAAAGAGTTGGTGCTTGAATTAGGAGAAGGCGAGTGGTTTAGGGTGCCATCATGTCTTTTCA ATTGTAAAAAGTTGACCTGTTTGGAGCTTTTCCGATGTGAATTTGATCCACCTCCTACTTTTAAAGGATTCTTGTGTTTGAGGAGCCTTAGTCTTCATCA AGTTTTGGTTGCTCCTGAGGCAATTGAAAGTCTGATTTCTGGTTGCCCACTTCTGGAAAGTCTTGCATTGTCTTATTTTGATAGCTTAGCTCTTAATATC CGTGCTCCAAATCTCAAGTACCTGTGCTTGGAAGGTGAATTTACTGATATTTGTCTTGAAAATACCCCACTTTTAGTTGCCATGTCTGTTGCTATGTATA TGAATGACGAAATGGCTGAATGCTTTGAGCAAAGTTCAAAGTGCAATTTTATCAAGTTTCTTGGGGGTGTACCTCGTCTTGAGAGGCTTGCTGGGCACAT CTACTTCACAAAGTATTTGAGCATAGGTGATTATCCAGGAAGTCTTGCTATTACATACAGCCACCTAAAAATAATTGAATTGTATCAAGTTAGTTTTGAA GATATGAAAGAGATACGTGTTGTTCTTCGCTTGATCATGAACTCTCCTAATTTGAAGGAACTTCGGATCTCGGGCTCATCAACCGCTGTGGCTTCTGTAG AAGCACCGAATTTGGAATTTTGGGCGAAAGAGTGCCCTAAAGATTGCACATTTAAACAACTTAAAGTTGTAAAGATGACAGATATGTCTGGTGTGCCACA TGAAATGGAATTTATGAAATTTTTGCTTGCGAATTCCCCAGTGCTTGAGACAATGTCAATCACACCTTGTGTATATGTCATGGATGGGAGATTGAATATG CTGATTCAGTTGGTCAGGTTTCGAAGGGCTTCTGCTGAAGCTGAAATTATATTTACCCGATGA
AA sequence Show only first row Show all	>Potri.010G134200.4 pacid=42796990 polypeptide=Potri.010G134200.4.p locus=Potri.010G134200 ID=Potri.010G134200.4.v4.1 annot-version=v4.1 MGDVEDPDLISDLPQSILESILTRLPIRDAVRTSILSSKWRYRWTTLTHLVFDDKCIRMCSDRPVVENCMVNFITRALFLHQGPIHKFQLSTSYLQCCPD IDQWILFLSRSDIKELVLELGEGEWFRVPSCLFNCKKLTCLELFRCEFDPPPTFKGFLCLRSLSLHQVLVAPEAIESLISGCPLLESLALSYFDSLALNI RAPNLKYLCLEGEFTDICLENTPLLVAMSVAMYMNDEMAECFEQSSKCNFIKFLGGVPRLERLAGHIYFTKYLSIGDYPGSLAITYSHLKIIELYQVSFE DMKEIRVVLRLIMNSPNLKELRISGSSTAVASVEAPNLEFWAKECPKDCTFKQLKVVKMTDMSGVPHEMEFMKFLLANSPVLETMSITPCVYVMDGRLNM LIQLVRFRRASAEAEIIFTR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13570			F-box/RNI-like superfamily pro...		Potri.010G134200 [exp]	0	1
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Potri.001G279500 [exp]	2.00	0.8721
AT3G06550		RWA2	REDUCED WALL ACETYLATION 2, O-...		Potri.010G148500 [exp]	2.44	0.8841
AT1G36980			unknown protein		Potri.002G089300 [exp]	4.12	0.8438
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.009G119500 [exp]	7.14	0.8655
AT1G35470			SPla/RYanodine receptor (SPRY)...		Potri.013G108400 [exp]	7.34	0.8291
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Potri.015G105000 [exp]	7.74	0.8587	Pt-PHS1.2
AT1G67300			Major facilitator superfamily ...		Potri.018G083200 [exp]	7.81	0.7942
AT5G43230			unknown protein		Potri.008G177500 [exp]	10.48	0.8521
AT3G28450			Leucine-rich repeat protein ki...		Potri.017G074400 [exp]	13.22	0.8333
AT3G06035			Glycoprotein membrane precurso...		Potri.008G195000 [exp]	14.14	0.8532

Compare expression of checked genes

Potri.010G134200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.