Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26190 968 / 0 Phosphoribulokinase / Uridine kinase family (.1) AT1G73980 879 / 0 Phosphoribulokinase / Uridine kinase family (.1) AT2G01460 218 / 2e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G40870 78 / 6e-15 UKL1, ATUK/UPRT1 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) AT1G55810 75 / 5e-14 UKL3 uridine kinase-like 3 (.1.2.3) AT3G27190 72 / 5e-13 UKL2 uridine kinase-like 2 (.1) AT4G26510 72 / 5e-13 UKL4 uridine kinase-like 4 (.1.2) AT3G27440 69 / 4e-12 UKL5 uridine kinase-like 5 (.1) AT1G32060 55 / 9e-08 PRK phosphoribulokinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G110500 [exp] 1202 / 0 AT1G26190 933 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.015G055400 [exp] 942 / 0 AT1G73980 953 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.008G130200 [exp] 224 / 1e-62 AT2G01460 1337 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G111900 [exp] 219 / 7e-61 AT2G01460 1325 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G069600 [exp] 77 / 1e-14 AT5G40870 852 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G332100 [exp] 77 / 2e-14 AT5G40870 820 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.017G071200 [exp] 73 / 2e-13 AT3G27440 707 / 0.0 uridine kinase-like 5 (.1) Potri.001G467800 [exp] 72 / 5e-13 AT1G55810 809 / 0.0 uridine kinase-like 3 (.1.2.3) Potri.011G165100 [exp] 72 / 6e-13 AT4G26510 818 / 0.0 uridine kinase-like 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030570 [exp] 991 / 0 AT1G26190 1018 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10030919 [exp] 976 / 0 AT1G26190 1007 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10009040 [exp] 919 / 0 AT1G73980 971 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10009678 [exp] 917 / 0 AT1G73980 962 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10025598 [exp] 233 / 2e-65 AT2G01460 1419 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10027063 [exp] 229 / 4e-64 AT2G01460 1457 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10041569 [exp] 79 / 5e-15 AT5G40870 853 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10035216 [exp] 77 / 1e-14 AT5G40870 850 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10021310 [exp] 72 / 4e-13 AT4G26510 753 / 0.0 uridine kinase-like 4 (.1.2) Lus10016989 [exp] 72 / 6e-13 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00485 [poplar] [flax] PRK Phosphoribulokinase / Uridine kinase family CL0273 [poplar] [flax] CYTH PF01928 [poplar] [flax] CYTH CYTH domain
Representative CDS sequence Show only first row Show all	>Potri.010G134400.2 pacid=42799227 polypeptide=Potri.010G134400.2.p locus=Potri.010G134400 ID=Potri.010G134400.2.v4.1 annot-version=v4.1 ATGGCTAAAGATACTTCTGAAGCTGAATCACACCCAAAACGGCTGGGACTCTTGAAAGATCAAGTCAGATCAACTAAGAAAAAGGACTCTGATCGCTTTG AGATAGTTCCAATCCAAAATCCTCTGTCATTTGAGAAGGGATTTTTTGTTGTTATCCGTGCCTGCCAATTGTTAGCACAAAAGAATGATGGAATAATATT GGTAGGTATAGCAGGCCCTTCAGGAGCTGGGAAGACCATTTTCACTGAAAAAATTCTAAACTTCTTGCCCAGCGTTGCTGTCATATCAATGGACAACTAC AATGATTCAAGCCGAATTGTTGATGGCAATTTTGATGACCCACGCTTGACGGACTATGACACGTTGCTCAAGAATGTTCATGATTTAAAGGCAGGGAAAC CAGTTGAGGTTCCAATCTATGATTTCAAGTCTAGCACACGAACAGGATACAGGACACTCGAAGTACCATCTTCTCGTATAGTGATTATTGAAGGAATCTA TGCTCTAAGTGCAAATCTGCGACCTTTGTTAGACCTCCGAGTATCTGTGACTGGGGGAGTTCACTTTGACCTTGTAAAACGGGTTTTAAGGGACATCCAA CGTGCTGGCCAAGAACCAGAGGAAATAATTCAACAGATATCTGAAACGGTATATCCAATGTACAAAGCCTTTATTGAGCCAGATCTCCAAACAGCGCATA TAAAAATTATAAATAAGTTCAACCCCTTCTCTGGATTCCAAAGTCCAACTTATATATTAAAGTCAGCAAGAAAGGTAACGGTGGACCAGATCAAAGCTGT TCTCTCTGAAGACCAAAAAGAGACAATGGAGCAGATTTATGACATATATCTTTTACCACCCGGTGAAGATCCAGAAACATGCCAATCGTATCTGAGGATG CGAAATAAAGATGGGAAATACAATCTTATGTTTGAGGAATGGGTTGCAGATGTTCCATTTATCATATCACCAAGGATCACTTTTGAAGTCACTGTTAAAC TCCTTAGTGGGCTGATGGCCTTGGGATACACAATAGCTGCTATCCTTCAAAGAAGTAGCCATATATTCTCTGATGATAGAGTGTGTGTGAAAATTGATTG GTTAGGACAACTTAATCGTCAATATGTTCAGGTGCAAGGAAGAGATCGGTTGGTTGTAAAATTCATTGCGGAGCAGCTAGGTTTGGAAGGTTCATACACT CCACGTACCTATATAGAACAGATTCAACTAGAAAGGCTTGTAAATGAGGTCATGGCTTTGCCAGATGACTTGAAGACAAAGCTCAGCTTAGATGAGGATC TGGTTTCAAGCCCCAAAGAAGCACTTTTGCGAGCCTCTGCTGATAGAGTTGCCAGGAGACTTAAGAATGGCAAAAGTGGCATGTCACATTCATATTCCTC TCAAAGGGACAAGAACTTGTCCAAGCTTACTGGGCTTGCTGCAACCAGTAAAAGGTTTGATGATAGAAATCTGGAGTCACCAGCTGCACTAGCCAACCAG GGAGCCATAACTCAACTTTCAGAACAGATTTCTTCACTAAATGACAGAATGGATGAGTTCACAACATGTATTGAAGAGTTAAATTCCAAGCTAACCATCA AGAAGAATTCTCCTAGCCAACAAAACATGGCTCTCCAAGCTGAAGTGTGCAATGGTTCTGCTCCAGCTTCTTACTTCGTATCTGGTTTAGGCAATGCTTC CTTGAATGGATCCAGAATGTTCAATTCCTCATCTTCATCCCAGTTGGCTAAGGAGTCACCTTTAATGGAGGAGCTATCAGGAATTGCCCGAGTGCAACGT CAAGTCATGCTTCGGTTAGATACGTTGAGCAATCTTGTTCGTGATAGCTTGGGAGAGAGGTCTCAGGAAGTGAGAAAAAACAGGAATAGATTGATTGTCC GTGATGGCCAAGCACCTCTTATTGCAGCATTGGCGGTTGGGTGCGTTGGACTGTGTTGGTTTGTTCGAGCTCGAAATGGACTCTAG
AA sequence Show only first row Show all	>Potri.010G134400.2 pacid=42799227 polypeptide=Potri.010G134400.2.p locus=Potri.010G134400 ID=Potri.010G134400.2.v4.1 annot-version=v4.1 MAKDTSEAESHPKRLGLLKDQVRSTKKKDSDRFEIVPIQNPLSFEKGFFVVIRACQLLAQKNDGIILVGIAGPSGAGKTIFTEKILNFLPSVAVISMDNY NDSSRIVDGNFDDPRLTDYDTLLKNVHDLKAGKPVEVPIYDFKSSTRTGYRTLEVPSSRIVIIEGIYALSANLRPLLDLRVSVTGGVHFDLVKRVLRDIQ RAGQEPEEIIQQISETVYPMYKAFIEPDLQTAHIKIINKFNPFSGFQSPTYILKSARKVTVDQIKAVLSEDQKETMEQIYDIYLLPPGEDPETCQSYLRM RNKDGKYNLMFEEWVADVPFIISPRITFEVTVKLLSGLMALGYTIAAILQRSSHIFSDDRVCVKIDWLGQLNRQYVQVQGRDRLVVKFIAEQLGLEGSYT PRTYIEQIQLERLVNEVMALPDDLKTKLSLDEDLVSSPKEALLRASADRVARRLKNGKSGMSHSYSSQRDKNLSKLTGLAATSKRFDDRNLESPAALANQ GAITQLSEQISSLNDRMDEFTTCIEELNSKLTIKKNSPSQQNMALQAEVCNGSAPASYFVSGLGNASLNGSRMFNSSSSSQLAKESPLMEELSGIARVQR QVMLRLDTLSNLVRDSLGERSQEVRKNRNRLIVRDGQAPLIAALAVGCVGLCWFVRARNGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26190			Phosphoribulokinase / Uridine ...		Potri.010G134400 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.011G035913 [exp]	5.56	0.8451
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Potri.001G245200 [exp]	6.78	0.8301
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036466 [exp]	7.74	0.8098
AT2G35390			Phosphoribosyltransferase fami...		Potri.003G088400 [exp]	12.24	0.8087
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Potri.004G163300 [exp]	18.16	0.7499	Pt-SPE1.1
AT5G62680			Major facilitator superfamily ...		Potri.012G071400 [exp]	18.24	0.8117
AT1G60420			DC1 domain-containing protein ...		Potri.002G017200 [exp]	19.59	0.7924
AT3G55410			2-oxoglutarate dehydrogenase, ...		Potri.008G051600 [exp]	22.97	0.7791
AT1G34360			translation initiation factor ...		Potri.009G137000 [exp]	29.24	0.6774
AT1G11340			S-locus lectin protein kinase ...		Potri.011G035800 [exp]	31.55	0.7983

Compare expression of checked genes

Potri.010G134400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.