Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68850 460 / 1e-163 Peroxidase superfamily protein (.1) AT1G44970 284 / 2e-94 Peroxidase superfamily protein (.1) AT4G36430 279 / 1e-92 Peroxidase superfamily protein (.1) AT2G18150 273 / 3e-90 Peroxidase superfamily protein (.1) AT5G58390 268 / 2e-88 Peroxidase superfamily protein (.1) AT3G50990 267 / 1e-87 Peroxidase superfamily protein (.1) AT5G58400 266 / 1e-87 Peroxidase superfamily protein (.1) AT2G18140 265 / 4e-87 Peroxidase superfamily protein (.1) AT5G05340 264 / 1e-86 Peroxidase superfamily protein (.1) AT5G06730 263 / 9e-86 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G110600 [exp] 597 / 0 AT1G68850 488 / 9e-175 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 281 / 1e-93 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.002G031200 [exp] 281 / 4e-93 AT1G44970 492 / 6e-176 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 272 / 6e-90 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.001G458900 [exp] 270 / 3e-89 AT1G14540 389 / 3e-136 Peroxidase superfamily protein (.1) Potri.007G019300 [exp] 269 / 1e-88 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1) Potri.003G214700 [exp] 269 / 3e-88 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.001G458700 [exp] 266 / 1e-87 AT1G14540 394 / 4e-138 Peroxidase superfamily protein (.1) Potri.001G145800 [exp] 266 / 1e-87 AT2G35380 458 / 6e-163 Peroxidase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029094 [exp] 444 / 2e-157 AT1G68850 439 / 1e-155 Peroxidase superfamily protein (.1) Lus10013065 [exp] 436 / 3e-154 AT1G68850 431 / 2e-152 Peroxidase superfamily protein (.1) Lus10010634 [exp] 276 / 2e-91 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10041784 [exp] 273 / 5e-90 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10006534 [exp] 272 / 9e-90 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10034207 [exp] 263 / 2e-86 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10032786 [exp] 262 / 4e-86 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10027989 [exp] 263 / 1e-85 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10024209 [exp] 262 / 1e-85 AT1G14550 432 / 3e-153 Peroxidase superfamily protein (.1) Lus10008173 [exp] 261 / 7e-85 AT5G06730 407 / 3e-142 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.010G134500.1 pacid=42798527 polypeptide=Potri.010G134500.1.p locus=Potri.010G134500 ID=Potri.010G134500.1.v4.1 annot-version=v4.1 ATGGCGTTTCCCCTTCATGAATCAAAGCTTCCCGTATTACCACTTGCTATGCTGGTTTTTATCTCCATCCTCAGCGGAAGCTTGCATGCAAGTGACCCTC CTTTAACTTTGGACCACTATGCTTCGACATGCCCCGATGTGTTTGAGATTGTCAAGAAAGAAATGGAATGTGAAGTTCTTTCTGATCCACGTAATGCAGC TTTGATATTGAGATTACATTTCCATGACTGCTTCGTTCAGGGGTGTGATGGTTCAGTATTGCTAGACGACACAATCACCTTGCAAGGGGAAAAGGAAGCT TTAACAAACACAAACTCTCTGAAAGGATTTAAAATCATTGATAGAATTAAGAACAAGATCGAGTCCGAGTGCCCTGGAATAGTCTCTTGTGCAGATATCC TCACCATCGCCGCAAGAGATGCAGTCATTCTGGTTGGTGGACCATACTGGGATGTTCCTGTGGGAAGGAAAGATTCTAAAACTGCAAGTTTCGAGCTCGC AGCATCAAATCTTCCAACAGCAGATGAGGGTCTGCTATCTATCATGACCAAGTTCCTTTACCAGGGCCTTTCAGCTACTGATTTGGTAGCTCTTTCAGGG GCGCACACTATTGGCATGGCACGTTGTGCGAATTTTCGATCAAGGATTTACGGGGACTTTGAAACAACTTCGGATGCAAGTCCAATGTCTGAGACCTATC TCAACAGCTTGAAATCGACGTGCCCAGCTGCTGGAGGATCTGGGGACAATAACATATCAGCGATGGACTATGCCACGCCTAATCTTTTTGACAACTCTTT CTATCAATTACTATTGAAAGGAGATGGACTGCTAAGCTCAGACCAGGAACTGTACTCAAGCATGCTTGGGATCGAAACAAAGAATCTTGTGATAAAGTAT GCTCATGACTCCCTTGCTTTCTTTCAGCAATTCGCAGATTCTATGGTGAAAATGGGAAATATTACAAATCCTGATAGCTTCGTCAACGGGGAAGTTAGGA CAAACTGCAGATTTGTGAACACATGA
AA sequence Show only first row Show all	>Potri.010G134500.1 pacid=42798527 polypeptide=Potri.010G134500.1.p locus=Potri.010G134500 ID=Potri.010G134500.1.v4.1 annot-version=v4.1 MAFPLHESKLPVLPLAMLVFISILSGSLHASDPPLTLDHYASTCPDVFEIVKKEMECEVLSDPRNAALILRLHFHDCFVQGCDGSVLLDDTITLQGEKEA LTNTNSLKGFKIIDRIKNKIESECPGIVSCADILTIAARDAVILVGGPYWDVPVGRKDSKTASFELAASNLPTADEGLLSIMTKFLYQGLSATDLVALSG AHTIGMARCANFRSRIYGDFETTSDASPMSETYLNSLKSTCPAAGGSGDNNISAMDYATPNLFDNSFYQLLLKGDGLLSSDQELYSSMLGIETKNLVIKY AHDSLAFFQQFADSMVKMGNITNPDSFVNGEVRTNCRFVNT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68850			Peroxidase superfamily protein...		Potri.010G134500 [exp]	0	1
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Potri.009G043700 [exp]	1.41	0.9886	CYP86A19,Pt-CYP86.4
AT4G20390			Uncharacterised protein family...		Potri.011G154900 [exp]	2.00	0.9882
AT5G41040			HXXXD-type acyl-transferase fa...		Potri.001G326300 [exp]	2.82	0.9788
AT1G29000			Heavy metal transport/detoxifi...		Potri.014G178800 [exp]	3.46	0.9722
AT1G53270		ABCG10	ATP-binding cassette G10, ABC-...		Potri.001G393300 [exp]	3.46	0.9797	3
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Potri.001G249700 [exp]	4.00	0.9671	CYP86.5
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Potri.007G036300 [exp]	5.91	0.9707
					Potri.017G046750 [exp]	6.70	0.9517
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Potri.012G056300 [exp]	7.41	0.9760
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Potri.010G220200 [exp]	7.41	0.9563

Compare expression of checked genes

Potri.010G134500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.