Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25545 272 / 1e-91 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G110700 [exp] 389 / 8e-138 AT3G25545 247 / 6e-82 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013064 [exp] 332 / 3e-115 AT3G25545 319 / 2e-110 unknown protein Lus10029095 [exp] 328 / 5e-114 AT3G25545 317 / 1e-109 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G134600.1 pacid=42797863 polypeptide=Potri.010G134600.1.p locus=Potri.010G134600 ID=Potri.010G134600.1.v4.1 annot-version=v4.1 ATGGAAGATGTACTTACAGAGCTCCCGCCCCCTTCAAGGTTCTTTCAGGAAGATCTGGACAACTTTGCAACTCCGTCACCACCACTTTCGTCTCCTTCCC TGCTGTTCTCTAATCCTAAACCCGATCAACCTCTCTGCCCTTCTCTCCTCATCATTGCATTATCTTCCCCTTCTCTGTATATCTTCCATCATATATCCTC GAAGACCCTAATTGGCAGTCTTGTACTACCTGAGATCCCTTTCTCAGGGAACTCAACTGAGCCCTCACTTGATGACAAGTCTTGCAATATCTATGCCCTC AATGATATGGACAATTTGACACTTGTTGTCTTGGTTCAGTGCTCTATCAGTGCTGAGAGATCCAATGCAGTTGCTAAGTTGCTTATTGGTGATCAAATTA TTCCCAAGAGGGTTCTAATAATGGATTCAGTTCAGAGCCAGAATTTCCGGGGTAAGCTCGCACCAGATGAGACATATGTTTTCAAGCTAGAGACATCAGC AGAGAGGAAAGGGCTGGATGGTGATGTTTGTGGTGGTTCATCGTTATTGAAAGGTTTAGACTATTTCCCTTCAGGAAGTGTGCTGGATGGCTTGGCAGCT GCTCTGTTGGCCAGATGTCAGATGAGGAAAATCAGAGGAACTCTTTGTGTTTCATGGCCTCGATATGGTGTTTATGTGGTGGCTATGGTGAAGTCTCTGC TGCAGAGGAATGTGTTGCCTGGCTTTGACTTAAGTACAATTGGAGATGCCAATGATAAATCTTCAAGGTTCACTTCGATTAAGAATTATCCTTTTGATTC TGATATGTATACCTGA
AA sequence Show only first row Show all	>Potri.010G134600.1 pacid=42797863 polypeptide=Potri.010G134600.1.p locus=Potri.010G134600 ID=Potri.010G134600.1.v4.1 annot-version=v4.1 MEDVLTELPPPSRFFQEDLDNFATPSPPLSSPSLLFSNPKPDQPLCPSLLIIALSSPSLYIFHHISSKTLIGSLVLPEIPFSGNSTEPSLDDKSCNIYAL NDMDNLTLVVLVQCSISAERSNAVAKLLIGDQIIPKRVLIMDSVQSQNFRGKLAPDETYVFKLETSAERKGLDGDVCGGSSLLKGLDYFPSGSVLDGLAA ALLARCQMRKIRGTLCVSWPRYGVYVVAMVKSLLQRNVLPGFDLSTIGDANDKSSRFTSIKNYPFDSDMYT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25545			unknown protein		Potri.010G134600 [exp]	0	1
AT5G16870			Peptidyl-tRNA hydrolase II (PT...		Potri.019G050100 [exp]	1.00	0.8256
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Potri.007G069300 [exp]	2.44	0.8010
AT4G24820			26S proteasome, regulatory sub...		Potri.012G093500 [exp]	2.44	0.8241
AT1G08220			unknown protein		Potri.009G002000 [exp]	2.82	0.8117
AT1G26740			Ribosomal L32p protein family ...		Potri.010G165100 [exp]	3.00	0.7745
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Potri.016G087900 [exp]	3.87	0.8027
AT4G22300		SOBER1	SUPPRESSOR OF AVRBST-ELICITED ...		Potri.011G023000 [exp]	4.69	0.7358
AT1G34760		RHS5, GF14OMICR...	ROOT HAIR SPECIFIC 5, general ...		Potri.005G164500 [exp]	7.21	0.7560
AT1G28395			unknown protein		Potri.011G057300 [exp]	7.34	0.8241
AT5G56280		CSN6A	COP9 signalosome subunit 6A (....		Potri.011G169900 [exp]	8.94	0.7470	Pt-CSN6.1

Compare expression of checked genes

Potri.010G134600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.