Plant FIBer expression Database

Potri.010G134950 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G113500
[exp]
70 / 1e-17 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G134950.1 pacid=42797796 polypeptide=Potri.010G134950.1.p locus=Potri.010G134950 ID=Potri.010G134950.1.v4.1 annot-version=v4.1
ATGGAGATGTTAACGTGCACGGAGGGCAGAGACATTATTACTGTGGATGAGGAGGAGACCTGGTGCACATACCGATACCAAGAAAATGTATCCCAAGAAG
ATAAATCTTACAGGAGCAGACAAAAACTAGTAAAGACCGGGAGGAAGAAGATGGTGCTGTTGACGGGGTTAAGCATAATGGATTTAGTGGTAGCAGGGAT
TTCCTTGGTGATTGGTTTGGGTATTTTCGTTTTTATTGCTTCCATTCTTTGCTCTGCTGCTTTCCTTCACAACGCCAAGCATGTGTCTTGA
AA sequence
>Potri.010G134950.1 pacid=42797796 polypeptide=Potri.010G134950.1.p locus=Potri.010G134950 ID=Potri.010G134950.1.v4.1 annot-version=v4.1
MEMLTCTEGRDIITVDEEETWCTYRYQENVSQEDKSYRSRQKLVKTGRKKMVLLTGLSIMDLVVAGISLVIGLGIFVFIASILCSAAFLHNAKHVS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G134950
[exp]
0 1
AT1G78340 ATGSTU22 glutathione S-transferase TAU ... Potri.005G037801
[exp]
8.94 0.7821
AT5G36930 Disease resistance protein (TI... Potri.011G012475
[exp]
11.04 0.7896
AT5G36930 Disease resistance protein (TI... Potri.011G014101
[exp]
20.73 0.7532
AT4G01100 ADNT1 adenine nucleotide transporter... Potri.003G137500
[exp]
24.89 0.7163
AT5G36930 Disease resistance protein (TI... Potri.011G013900
[exp]
37.78 0.7392
AT5G24270 ATSOS3, CBL4, S... CALCINEURIN B-LIKE PROTEIN 4, ... Potri.003G141400
[exp]
39.38 0.7510
AT1G17650 GR2, GLYR2 glyoxylate reductase 2 (.1) Potri.003G036600
[exp]
42.70 0.7684
AT4G14210 PDE226, PDS3 PIGMENT DEFECTIVE 226, phytoen... Potri.004G177400
[exp]
43.63 0.7700
AT5G58940 CRCK1 calmodulin-binding receptor-li... Potri.009G041900
[exp]
47.11 0.7308
AT5G59770 Protein-tyrosine phosphatase-l... Potri.001G235400
[exp]
50.40 0.6872

Potri.010G134950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.