Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26230 813 / 0 Cpn60beta4 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) AT1G55490 721 / 0 Cpn60beta1, LEN1, CPN60B LESION INITIATION 1, chaperonin-60beta1, chaperonin 60 beta (.1.2) AT3G13470 718 / 0 Cpn60beta2 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) AT5G56500 708 / 0 Cpn60beta3 chaperonin-60beta3, TCP-1/cpn60 chaperonin family protein (.1.2) AT2G28000 447 / 3e-151 Cpn60alpha1, SLP, CH-CPN60A, CPN60A SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) AT3G23990 403 / 5e-134 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) AT2G33210 387 / 2e-127 HSP60-2 heat shock protein 60-2 (.1.2) AT3G13860 382 / 5e-126 HSP60-3A heat shock protein 60-3A (.1) AT5G18820 371 / 2e-121 Cpn60alpha2, EMB3007 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) AT1G24510 66 / 4e-11 TCP-1/cpn60 chaperonin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G002500 [exp] 727 / 0 AT3G13470 1030 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.003G222400 [exp] 724 / 0 AT3G13470 1033 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.004G213400 [exp] 453 / 3e-153 AT2G28000 964 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.009G009300 [exp] 450 / 3e-152 AT2G28000 919 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.003G173900 [exp] 415 / 1e-138 AT3G23990 1016 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.001G054400 [exp] 411 / 4e-137 AT3G23990 1018 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.015G122800 [exp] 399 / 2e-132 AT5G18820 821 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Potri.002G252900 [exp] 396 / 2e-131 AT3G23990 995 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.003G039475 [exp] 325 / 7e-104 AT3G13860 810 / 0.0 heat shock protein 60-3A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030917 [exp] 848 / 0 AT1G26230 863 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Lus10013404 [exp] 729 / 0 AT3G13470 1037 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10010321 [exp] 728 / 0 AT3G13470 1041 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10037386 [exp] 447 / 5e-151 AT2G28000 960 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Lus10022832 [exp] 414 / 3e-138 AT3G23990 980 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011898 [exp] 413 / 5e-138 AT3G23990 987 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011902 [exp] 413 / 6e-138 AT3G23990 964 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011770 [exp] 393 / 1e-128 AT3G23990 994 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10041329 [exp] 387 / 4e-128 AT2G28000 845 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Lus10038352 [exp] 385 / 7e-127 AT5G18820 767 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [poplar] [flax] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Potri.010G135100.2 pacid=42798677 polypeptide=Potri.010G135100.2.p locus=Potri.010G135100 ID=Potri.010G135100.2.v4.1 annot-version=v4.1 ATGGCATGCTCTCCATCTCTAATCTCTGCAATATCTCTCACTAACCCAACAAGGCTCAAGAGGGTCTCCTCTCCTTCTATGTTAAGCCCGAAAGCCATGG CCAAGGAAATTTACTTCAACCATGATGGTTCAACCACGAAGAAACTTCTGGCAGGGGTGGAGATGGTGTCAGAGTTATTAGGAGTGACTTTAGGACCGAA AGGAAGGAATGTGGTGTTGCAAAACAAGTATGGACCTCCCAAGATTGTTAATGATGGAGAAACTGTCCTCAAAGAGATTGAACTGGAGGATCCCTTGGAG AATGTTGGAGTAAAATTGGTGAGGCAAGCTGGTGCGAAAACAAATAACCTTGCTGGTGATGGTTCGACAACATCTGTGGTTCTTGCTCATGGTTTAATCG CTGAGGGTCAAAAGGTGATTGCATCTGGCATGAATCCTGTTCAAATTGCTCGTGGGATTGTGAAAACCTCGGAAGCTCTTGTATCTGAACTCAAATTGAT GTCGAGGGAGGTTGAGAACGATGAGCTTGCAGATGTTGCTGCAGTTAGCGCAGGGAATGATTATACAGTGGGAAACATGATATCCGATGCACTTCAACAA GTGGGAAGAAGGGGAGTAGTCACAATTGAGAAAGGAAGGTGTACTGAGAACATCCTAGAAATTGTAGAAGGAATGCAATTTGATCGTGGATATTTGTCTC CTTACTTCGTAACTGATCGGCAAAGAATGGTAGTGGAGTTCCACAACTGCAAGCTACTCTTGGTTGACAAAAAAATACAGAATGCAAAGGAGGTGTTCAA AATATTGGATAATGCAGTTAAAGAGATGTACCCAATTGTAATAGTTGCAGAGGATGTGGACCAGGAAGCTCTGGCTCCAATCATTAGGAACAAACTCAAG GGTCTATTGAAGGGAGCTGCTATTAAAGCTCCTGCCTTTGGTGAACGGAAGAGCCACTACTTGGATGACATCGCTATCTTGACAGGAGGCACTGTAATTA GAGATGATATGGGGCTGAAGCTAGAAAAGGCTGGGAAGGAGGTGTTGGGCACTGCTACTAAGGTGGTGATAACAAAAGATTCTACGTTGATAGTAACTGA TGGGAGCACTCGAGAAGCTGTGGAGAAAAGGGTTTCTCAGATATGTAGTCTTGTTGAGAACACTGAAGAAAAATTTCAAAAGAAAATATTGAATGAAAGA ATAGCAAGGTTATCTGGAGGGATTGCTATTCTGCAGGTAGGAGCACAAACACAAGTCGAGTTGAAGGACAAACTGCTGAGAATTGAGGATGCTTTAAATG CAACCAAGGCAGCAATTGAGGAAGGTGTAGTAGTGGGAGGTGGTTGTAGCCTTTTGAGGCTATCAACTAAGGTGGATGGTATTAAAGAACTTTTGGATAA TGAAGAGCAGAAGATTGGAGCTGAGATCTTCAAAAGAGCTTTGAGCTATCCTGCACGATTAATAGCTAAGAATGCAGGTGTAAATGGAAATGTCGTCATA AACCAGGTTTTGTCAAATGCTGATATAAGATATGGATACAATGCTGCAACAGACACTTACGAGGATTTGATAACTGCTGGAATTATAGATCCCACAAAGG TGGTTAGATGTTGTTTGGAGCATGCAACATCGGTGGCCAAGACATTCCTGACATCCGATGCTGTCGTAGTTGACATCAAGGAATCGGATCCCCTCCCAAT GAGGAAACGAATGCCACCAGTAGCCCCTCCTCCTATGCCAAAATCCCCAGGTGTTGGACCAGTTGGCGTATACTTGTAG
AA sequence Show only first row Show all	>Potri.010G135100.2 pacid=42798677 polypeptide=Potri.010G135100.2.p locus=Potri.010G135100 ID=Potri.010G135100.2.v4.1 annot-version=v4.1 MACSPSLISAISLTNPTRLKRVSSPSMLSPKAMAKEIYFNHDGSTTKKLLAGVEMVSELLGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLE NVGVKLVRQAGAKTNNLAGDGSTTSVVLAHGLIAEGQKVIASGMNPVQIARGIVKTSEALVSELKLMSREVENDELADVAAVSAGNDYTVGNMISDALQQ VGRRGVVTIEKGRCTENILEIVEGMQFDRGYLSPYFVTDRQRMVVEFHNCKLLLVDKKIQNAKEVFKILDNAVKEMYPIVIVAEDVDQEALAPIIRNKLK GLLKGAAIKAPAFGERKSHYLDDIAILTGGTVIRDDMGLKLEKAGKEVLGTATKVVITKDSTLIVTDGSTREAVEKRVSQICSLVENTEEKFQKKILNER IARLSGGIAILQVGAQTQVELKDKLLRIEDALNATKAAIEEGVVVGGGCSLLRLSTKVDGIKELLDNEEQKIGAEIFKRALSYPARLIAKNAGVNGNVVI NQVLSNADIRYGYNAATDTYEDLITAGIIDPTKVVRCCLEHATSVAKTFLTSDAVVVDIKESDPLPMRKRMPPVAPPPMPKSPGVGPVGVYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26230		Cpn60beta4	chaperonin-60beta4, TCP-1/cpn6...		Potri.010G135100 [exp]	0	1
AT1G03670			ankyrin repeat family protein ...		Potri.018G077766 [exp]	2.64	0.9618
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Potri.004G166600 [exp]	4.24	0.9431
					Potri.001G341700 [exp]	4.47	0.9360
AT4G21380		ARK3	receptor kinase 3 (.1)		Potri.019G120300 [exp]	4.79	0.9271
AT3G27180			S-adenosyl-L-methionine-depend...		Potri.001G331900 [exp]	5.74	0.9563
AT1G01320			Tetratricopeptide repeat (TPR)...		Potri.002G170900 [exp]	6.63	0.9460
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Potri.009G045601 [exp]	9.16	0.9336
					Potri.016G031166 [exp]	9.79	0.9346
					Potri.016G031232 [exp]	13.26	0.9311
AT1G29350			Kinase-related protein of unkn...		Potri.002G059300 [exp]	13.41	0.9315

Compare expression of checked genes

Potri.010G135100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.