Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04032 325 / 4e-110 ZIP7 zinc transporter 7 precursor (.1) AT1G31260 316 / 2e-106 ZIP10 zinc transporter 10 precursor (.1) AT4G19690 288 / 1e-95 ATIRT1, IRT1 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) AT4G19680 262 / 2e-85 ATIRT2, IRT2 iron regulated transporter 2 (.1.2) AT1G05300 243 / 4e-78 ZIP5 zinc transporter 5 precursor (.1.2) AT2G32270 235 / 5e-75 ZIP3 zinc transporter 3 precursor (.1) AT5G45105 233 / 1e-74 ZIP8 zinc transporter 8 precursor (.1.2) AT3G12750 230 / 6e-73 ZIP1 zinc transporter 1 precursor (.1) AT5G62160 206 / 7e-64 AtZIP12, ZIP12 ,XLG2 zinc transporter 12 precursor (.1) AT1G10970 204 / 4e-62 ATZIP4, ZIP4 zinc transporter 4 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134300 [exp] 578 / 0 AT2G04032 402 / 4e-140 zinc transporter 7 precursor (.1) Potri.015G117900 [exp] 337 / 1e-114 AT4G19690 443 / 2e-156 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) Potri.015G117700 [exp] 327 / 2e-111 AT1G31260 436 / 5e-154 zinc transporter 10 precursor (.1) Potri.006G006800 [exp] 285 / 2e-94 AT1G05300 322 / 6e-109 zinc transporter 5 precursor (.1.2) Potri.006G006600 [exp] 283 / 7e-94 AT1G05300 328 / 2e-111 zinc transporter 5 precursor (.1.2) Potri.010G173300 [exp] 258 / 1e-83 AT3G12750 339 / 2e-115 zinc transporter 1 precursor (.1) Potri.001G160400 [exp] 252 / 2e-81 AT3G12750 320 / 5e-108 zinc transporter 1 precursor (.1) Potri.008G083100 [exp] 251 / 4e-81 AT3G12750 350 / 7e-120 zinc transporter 1 precursor (.1) Potri.018G053300 [exp] 181 / 5e-53 AT1G10970 440 / 3e-153 zinc transporter 4 precursor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040615 [exp] 331 / 2e-112 AT1G31260 437 / 6e-154 zinc transporter 10 precursor (.1) Lus10041647 [exp] 298 / 2e-99 AT3G12750 383 / 2e-132 zinc transporter 1 precursor (.1) Lus10024107 [exp] 290 / 2e-96 AT3G12750 394 / 4e-137 zinc transporter 1 precursor (.1) Lus10041613 [exp] 288 / 1e-95 AT3G12750 397 / 1e-138 zinc transporter 1 precursor (.1) Lus10006935 [exp] 223 / 2e-70 AT3G12750 295 / 2e-98 zinc transporter 1 precursor (.1) Lus10014062 [exp] 197 / 2e-60 AT3G12750 318 / 3e-107 zinc transporter 1 precursor (.1) Lus10014063 [exp] 177 / 9e-53 AT3G12750 262 / 2e-85 zinc transporter 1 precursor (.1) Lus10019854 [exp] 167 / 7e-50 AT3G12750 280 / 6e-94 zinc transporter 1 precursor (.1) Lus10031307 [exp] 115 / 3e-31 AT2G30080 264 / 2e-89 ZIP metal ion transporter family (.1) Lus10019853 [exp] 76 / 4e-17 AT3G12750 84 / 1e-20 zinc transporter 1 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF02535 [poplar] [flax] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Potri.010G135400.2 pacid=42797368 polypeptide=Potri.010G135351.1.p locus=Potri.010G135400 ID=Potri.010G135400.2.v4.1 annot-version=v4.1 ATGGCATCCTTCACAGAAATCAATGCAATCACCACTTCTCTAATCTTGATCCTCTTATTCACATTGCCAACATCAACATCGGCACGACAACAATGTGATT CCGCTTCGACAGGAGGATGCCACGACGAGGCCAAATCCTTACAACTAAAGCTAATTGCCATCTTTTCAATCTTGATTGCTAGTATGATTGGCATGTGTTT ACCATTGTTTTCACGTGCGATCCCTGCACTCATGCCCGATAGAGATTTATTTGTAGTGATAAAGGCATTTGCTTCAGGTGTTATCCTTTCGACGGGGTAC ATGCACGTGTTACCGGACTCTTTTAACGACTTGATGTCTGATTGTTTGCCGATAAATCCTTGGAAGAAGTTTCCTTTTACCACTTTTGTTGTCATGTTGT CAGCTTTACTCACTCTCATGATCGATTCTTTCGCGATGAGTTACTACAAGAAGCACGATCACAGAGGGAGCAAACCTCTTGGTCCCAAACTCTTACCACT GGGCCTCAAGAAGCACGGTTTTGATAGGAAGGGTGGTGGGGTAGACGGTGAGAAAGTGAACAATGGGGTGAGAGGGTTAGGGAATGTTGAAAATGGTGGT GCACATGTTGGACATTGCGATGGATTTAATGGCGGGGCTAATGACAAGGATTCAATGTTGTTGAGGAATCGTGTTGTGGCTCAGGTTATGCCGCTCATCG CTGCTCTCTGCTTCCATCAACTCTTTGAAGGAATGGGTCTTGGAGGATGCATATTACAGATAAAAGCAATCCTGGTGTTCTTCTTCTCTACAACAACCCC ATTTGGAATTGTACTAGGAATTGGTTTGTCAAATGTGTACAGTGAGAGCAGCCCAACAGCTCTAATTGTTGTGGGATTACTGAATGCATCATCTGCTGGA TTACTGAATTACATGGCACTGGTGGACCTCTTAGCTGCTGACTTCATGGGGCCTAAACTTCAAGACAGTATGAGGCTTCAGGCATGGTCATTTGTTGCAG TTCTACTCGGCGCAGGAGGCATGTCGCTTATGGCAAAATGGGCTTAG
AA sequence Show only first row Show all	>Potri.010G135400.2 pacid=42797368 polypeptide=Potri.010G135351.1.p locus=Potri.010G135400 ID=Potri.010G135400.2.v4.1 annot-version=v4.1 MASFTEINAITTSLILILLFTLPTSTSARQQCDSASTGGCHDEAKSLQLKLIAIFSILIASMIGMCLPLFSRAIPALMPDRDLFVVIKAFASGVILSTGY MHVLPDSFNDLMSDCLPINPWKKFPFTTFVVMLSALLTLMIDSFAMSYYKKHDHRGSKPLGPKLLPLGLKKHGFDRKGGGVDGEKVNNGVRGLGNVENGG AHVGHCDGFNGGANDKDSMLLRNRVVAQVMPLIAALCFHQLFEGMGLGGCILQIKAILVFFFSTTTPFGIVLGIGLSNVYSESSPTALIVVGLLNASSAG LLNYMALVDLLAADFMGPKLQDSMRLQAWSFVAVLLGAGGMSLMAKWA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04032		ZIP7	zinc transporter 7 precursor (...		Potri.010G135400 [exp]	0	1
AT2G04032		ZIP7	zinc transporter 7 precursor (...		Potri.010G134300 [exp]	3.31	0.7750	Pt-ZIP7.2
AT2G19320			unknown protein		Potri.006G073300 [exp]	3.87	0.6123
					Potri.010G000901 [exp]	4.89	0.6693
					Potri.001G360550 [exp]	7.87	0.7622
					Potri.002G208637 [exp]	10.24	0.6022
AT1G64160			Disease resistance-responsive ...		Potri.001G096440 [exp]	16.49	0.5717
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Potri.008G105500 [exp]	27.34	0.5555
					Potri.007G018201 [exp]	29.49	0.5073
AT3G12600		ATNUDT16	nudix hydrolase homolog 16 (.1...		Potri.016G036700 [exp]	34.33	0.5870
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.008G223500 [exp]	50.83	0.5122

Compare expression of checked genes

Potri.010G135400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.