Plant FIBer expression Database

Potri.010G135666 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G25185 45 / 1e-07 Defensin-like (DEFL) family protein (.1)
AT2G04045 39 / 5e-05 Defensin-like (DEFL) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G135666.1 pacid=42800258 polypeptide=Potri.010G135666.1.p locus=Potri.010G135666 ID=Potri.010G135666.1.v4.1 annot-version=v4.1
ATGGGCAAGTCTTCCATTAAGTTGGCCTTCTTAGTCGTGCTCGTTTTCGCAGCTGTCATGTCATTTTCAGTGGTATCAAGAGCTGATGGATCCGTATTTT
TGCCGTGTAAAAGTGACTCAGACTGCAAAGCTATTGAGTGTGCAGTCGGCACTGCCCATTGTGTTAACAACAACTGCCGTTGCGACTCTAAGGTGGAGAG
AGTTAATGCAGACATCTTAGCTTCAGATTGTAAACATGACAAGGACTGCGTGAAGTTGTTCCCATAA
AA sequence
>Potri.010G135666.1 pacid=42800258 polypeptide=Potri.010G135666.1.p locus=Potri.010G135666 ID=Potri.010G135666.1.v4.1 annot-version=v4.1
MGKSSIKLAFLVVLVFAAVMSFSVVSRADGSVFLPCKSDSDCKAIECAVGTAHCVNNNCRCDSKVERVNADILASDCKHDKDCVKLFP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G25185 Defensin-like (DEFL) family pr... Potri.010G135666
[exp]
0 1
AT2G26450 Plant invertase/pectin methyle... Potri.018G051200
[exp]
5.09 0.6748
AT1G65480 FT FLOWERING LOCUS T, PEBP (phosp... Potri.008G077700
[exp]
22.80 0.5599 Pt-PNFT3.4
AT3G05610 Plant invertase/pectin methyle... Potri.005G022900
[exp]
33.57 0.5186 PEF1.2
AT5G44265 Bifunctional inhibitor/lipid-t... Potri.007G138400
[exp]
34.35 0.5218
AT5G27470 seryl-tRNA synthetase / serine... Potri.007G070501
[exp]
37.78 0.5055
AT5G10820 Major facilitator superfamily ... Potri.018G017400
[exp]
40.62 0.4961
AT5G64080 AtXYP1 xylogen protein 1, Bifunctiona... Potri.005G169000
[exp]
44.88 0.4947
AT2G04920 F-box and associated interacti... Potri.018G007900
[exp]
51.62 0.4722
AT1G80660 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase... Potri.003G179800
[exp]
53.99 0.5545 HA1.4
Potri.013G119325
[exp]
56.44 0.4560

Potri.010G135666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.