Plant FIBer expression Database

Potri.010G135900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G68910 473 / 8e-161 WIT2 WPP domain-interacting protein 2 (.1.2.3)
AT5G11390 343 / 4e-109 WIT1 WPP domain-interacting protein 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G106400
[exp]
405 / 9e-133 AT5G11390 510 / 2e-172 WPP domain-interacting protein 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029109
[exp]
585 / 0 AT1G68910 487 / 1e-166 WPP domain-interacting protein 2 (.1.2.3)
Lus10013053
[exp]
567 / 0 AT1G68910 485 / 5e-166 WPP domain-interacting protein 2 (.1.2.3)
Lus10034351
[exp]
342 / 1e-108 AT5G11390 444 / 1e-146 WPP domain-interacting protein 1 (.1)
Lus10005102
[exp]
247 / 2e-75 AT5G11390 300 / 5e-95 WPP domain-interacting protein 1 (.1)
Lus10005101
[exp]
74 / 4e-15 AT5G11390 91 / 2e-21 WPP domain-interacting protein 1 (.1)
PFAM info
Representative CDS sequence
>Potri.010G135900.1 pacid=42797237 polypeptide=Potri.010G135900.1.p locus=Potri.010G135900 ID=Potri.010G135900.1.v4.1 annot-version=v4.1
ATGGCGAACTATGCCATTGAGGATGCTTACAGTAGCAACCCAGAATCCAGCAAAGTTTATATGCACTCATCCAGTAGAGAAGGAATGCAAGAGGTTGAAA
GTACCACGGAAGTTTTAACCAGAGTAGACTGGGACCTGGCATACTCTTCTGAGAAGTTGGTAAACTTGCATGTACTTTTAGTGCATCTATTGGCACGAGA
TAATAATCTTGAGGCAAGAATGGCCACAGAAAATAGCTATATCCTGGCAATAGCCATTGAGAAGGCATTGGCGTTTGATCTTCTCTCTGGGATTTTAGAT
TCCGAGGTAAGAGAGGTGGAGAATTTCATGGAAAATATCCATTCAGAGATTGTTGATGCCCGTCATAAAATATCTTCTTGCAGACACTCAACAGATCTAT
TCACTGTGATGGAGAAGAAATTGCATAATTCGGAAGAATCTTTGATGAAGTTTCGAGAGCGTGTCTTAGAGGTGAAGGCACAGTCAGCAAAATTGCCAAT
GGCCTTTTCAGCTCTCATACTTGAGAACTGGAAAGATGATAAGGCCACCGAGTTACCAGCCAGTGGGCAGATTTCAAATATGGATGCGAATTCAAAAAGG
CAGACAGCTGAAAAACAAAGAAATGTCCTGAGGATGTTGGAGAAGTCTCTTAAAAGAGAAATGGATACGCAGAAGAAAATTTCTGCACTTGAACAAAATG
AAGAACATCTGAAATTGAAGCTGCACTATACAGAACAGGTGTCTTTTTGCATGGAGGAAGCAGCAGAAGTCGTTTGGGGAAGATTTTTAGAGGCAGAAAA
TGCTTCTGAAGTGCTCATGGGGATTTCCAAAGAAATGGTTGGTCGACTTCAGATTTTTCAATTCACTTTGAACGGTTCAATCCAACGAGAAGATGAGTTG
AGTTCTAAACTGCAAGTTTGTATAAAACAGCTGGATGCAAAAGATACTGTTATAAAGAAGCTTGAGAGCAGCATTGCAGAACACATTGCCAGAAGTTCTC
AAGTGCCCATTTTGACGGAAAAGGTGAAATCACTTGAAGAACAGCTGAAAAAATCAGAGTTACGTCTGCAGAATGCAAATGCTTTAAATGCAGAAAGTCA
AGAGCACCTAAGTGAAATGGAAAATTTGGTCGAGTCTCTGAAAGAAAGCGTCTATGAAGCAGAAACGAGGGCTGAGAATGCAGAGACAAAGGTCACACAG
CTAACAGATACGAACGTGGAACTTGTGGAGGAGATTAATTTTCTTAAAGGCAGTAGAGATAGTAGCACAAAGAAAGTGACTGTACTTGAGAAGCAGTTGA
GGGAGTCAGAAATCCAACTACAGCATGCAAAAGCGTCATCTGAAGCAAGTCAAGAGCAACAAAACATGTTATACACTGCAATTTGGGATATGGAAACATT
AATTGATGACCTGAAATCGAAGGTATCGAAAGCTGAGAGTAAGACTGATGGTGTAGAGGAGCAATGCATTGTATTATCCGAGTCTAACATGGAACTTAAT
AAAGAGATCAGTTTCTTAAGGTCTAGAGTGAATGCCTTGGAGATGTGTCTGCATGAAGCTAACGAATCAAAAGCTGCAAAAGCAAAAGAAATTATTGTAA
GGACTGAGCTTATCATGGCTACAGTCATGCAGCTAACCAGAGAGAGGGAACGCATCCAGAATCAGCTATTTTCTCTAACAAGGGAGAATGAAATACTGGC
TGCTAAGTTAAGAGGTGCTTCATTAACCATGTTCGACAATGGACATGGTGGCGGGGGCAAGTTGGTTGCTTCCAAGAATGATTCATTGAGTGAGACTTGT
GAAAAACTTTTCGAGGAAGCAATGCCCTTGAGTAAAAGTCTCAAGACTGCTGGTTAA
AA sequence
>Potri.010G135900.1 pacid=42797237 polypeptide=Potri.010G135900.1.p locus=Potri.010G135900 ID=Potri.010G135900.1.v4.1 annot-version=v4.1
MANYAIEDAYSSNPESSKVYMHSSSREGMQEVESTTEVLTRVDWDLAYSSEKLVNLHVLLVHLLARDNNLEARMATENSYILAIAIEKALAFDLLSGILD
SEVREVENFMENIHSEIVDARHKISSCRHSTDLFTVMEKKLHNSEESLMKFRERVLEVKAQSAKLPMAFSALILENWKDDKATELPASGQISNMDANSKR
QTAEKQRNVLRMLEKSLKREMDTQKKISALEQNEEHLKLKLHYTEQVSFCMEEAAEVVWGRFLEAENASEVLMGISKEMVGRLQIFQFTLNGSIQREDEL
SSKLQVCIKQLDAKDTVIKKLESSIAEHIARSSQVPILTEKVKSLEEQLKKSELRLQNANALNAESQEHLSEMENLVESLKESVYEAETRAENAETKVTQ
LTDTNVELVEEINFLKGSRDSSTKKVTVLEKQLRESEIQLQHAKASSEASQEQQNMLYTAIWDMETLIDDLKSKVSKAESKTDGVEEQCIVLSESNMELN
KEISFLRSRVNALEMCLHEANESKAAKAKEIIVRTELIMATVMQLTRERERIQNQLFSLTRENEILAAKLRGASLTMFDNGHGGGGKLVASKNDSLSETC
EKLFEEAMPLSKSLKTAG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G68910 WIT2 WPP domain-interacting protein... Potri.010G135900
[exp]
0 1
AT1G24330 ARM repeat superfamily protein... Potri.008G177100
[exp]
2.23 0.8161
AT5G47750 PK5, D6PKL2 D6 protein kinase like 2 (.1) Potri.006G003800
[exp]
3.74 0.7824 Pt-CCSPK1.2
AT5G10290 leucine-rich repeat transmembr... Potri.007G094500
[exp]
6.32 0.7740
AT5G55340 MBOAT (membrane bound O-acyl t... Potri.008G145700
[exp]
9.69 0.8154
AT4G25500 ATRSP40, AT-SRP... ARABIDOPSIS THALIANA ARGININE/... Potri.012G133600
[exp]
10.81 0.7196
AT1G16560 Per1-like family protein (.1.2... Potri.015G136600
[exp]
12.36 0.8058
AT2G36840 ACR10 ACT domain repeats 10, ACT-lik... Potri.001G442600
[exp]
12.80 0.7162
AT2G39760 ATBPM3 BTB/POZ/MATH-domains containin... Potri.010G199200
[exp]
13.56 0.7976
AT2G41060 RNA-binding (RRM/RBD/RNP motif... Potri.005G081600
[exp]
18.24 0.7731
AT4G05150 Octicosapeptide/Phox/Bem1p fam... Potri.004G032200
[exp]
20.29 0.6823

Potri.010G135900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.