Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68930 997 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G22070 637 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 573 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 551 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49710 533 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 529 / 4e-177 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14850 509 / 9e-172 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 514 / 1e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 517 / 3e-170 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 503 / 5e-169 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G085500 [exp] 620 / 0 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.014G012500 [exp] 583 / 0 AT3G49710 995 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 580 / 0 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G027800 [exp] 567 / 0 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 566 / 0 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 565 / 0 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 550 / 0 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 545 / 0 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 544 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030908 [exp] 1158 / 0 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 1142 / 0 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10016425 [exp] 610 / 0 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013991 [exp] 546 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 544 / 0 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020081 [exp] 530 / 4e-179 AT3G49710 886 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 531 / 2e-178 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012971 [exp] 527 / 2e-178 AT1G68930 487 / 5e-163 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10006123 [exp] 525 / 8e-178 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 532 / 6e-176 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.010G136200.2 pacid=42797472 polypeptide=Potri.010G136200.2.p locus=Potri.010G136200 ID=Potri.010G136200.2.v4.1 annot-version=v4.1 ATGTCGAATTCCTCTAACTACTACTCTTCCCTGCTAAAACTTTGCTGCGAAACCCGAAACCAAACACAAGCCAAGAAGCTCCATTGCCTCATAATCAAGT CCTTAACAAACCCAGAAACCTTTCTCTATAACAATCTCATCAACGCTTACAGTAAATTAGGCAATATAACCTATGCACGCCATGTGTTTGACAAAATGCC TCAACCTAACTCATTTTCATGGAACACCATGCTTTCTGCTTATTCGAAATCTGGGGATTTATCAACAATGCAAGAGATCTTTAGTATCATGCCAAATCGA GATGGGGTCTCTTGGAACTCGCTTATTTCTGGGTATGTGTGTTATGGCTCAGTCGTGGAGGCTGTTAAAACTTATAACTCGATGATGAAAGATGGAGTTT TAAATTTGAACAGGATTACATTTTCTACTATGCTTTTGTTGGTGTCGAGTCAAGGGTGTGTCGATTTGGGTAGGCAGATTCATGGGCAGATTGTGAAATT TGGGTTTGGGGCTTATGTTTTTGTAGGGAGTTCTTTGGTGGATATGTATGCTAAAATGGGGTTAGTTTCTGTGGCAAGTCAGGTTTTTGATGAGGTTCAA GAGAGGAATGTGGTGATGTATAATACAATGATTACAGGGCTTCTGAGAAGTGGGATGGTAAAGGATTCGAAGAGGCTGTTTCATGGTATGAAGGAAAGAG ATTCCATTTCGTGGACAACAATGATCACAGGGCTTATACAAAATGGATTGGAGGCCGAAGCTATGGATTTGTTTAGAGATATGAGGCAAGAAGGGATGGC GATGGATCAGTATACGTTTGGTAGTGTGTTGACTGCATGCGGGGGGCTTAGGGCTTTGAAAGAGGGAAAGGAAATTCATACTCTTATAATTAGGAGTGGA TATAACCATAATGTCTTTGTTGGTAGTGCTCTCGTTGACATGTATTGTAAGTGTAGAAGTGTACGGTACGCGGAAGCAGTGTTCAAGAGAATGGCAAATA AGAATGTTGTATCATGGACTGCTATGTTAGTGGGTTATGGCCAGAATGGGTTCAGTGAAGAAGCTGTCAGGGTTTTTTGTGACATGCAAAGAAACGGGAT TGAGCCAGATGATTTCACTTTAGGAAGTGTTATTAGCTCATGTGCAAATCTAGCTAGCTTAGAAGAAGGTGCACAATTTCATTGTCAAGCCCTAGTTTCT GGGTTGATTTCTTTTATAACAGTCTCCAATGCGCTCATTACTTTGTATGGTAAATGTGGAAGTATAGAAGATTCCAATCAGCTGTTTGATGAAATGAGCT TCAGGGATGAAGTTTCTTGGACTGCTTTGGTTTCAGGATACGCACAATTTGGAAAAGCCAACGAGACAATTGATTTATTTGAAAGAATGCTGGTCCAAGG TTTAAAACCTGATGCTGTTACATTCATTGCAGTCCTCTCAGCATGCAGTAGAGCGGGGTTGGTAGAGAGAGGACAACAGTATTTTGAATCAATGCTGAAG GACCATGGAATAATTCCTTTTTCTGATCACTACACCTGCATGATTGACCTTTTCGGTCGAGCAGGAAGGTTAGAAGAAGCCAAAAATTTTATCAACAAGA TGCCTTTCAGTCCTGATTCAATAGGCTGGGCAACTTTGCTGAGTTCTTGCAGACTTTATGGCAATGAGGAAATCGGCAAATGGGCAGCCGAGTCTCTTCT AGAACTAGATCCCCAGAACCCTGCAGGCTATATCTTGCTCTCCAGCATCTATGCTGCTAAAGGAAAATGGAGCAATGTGGCCCAATTAAGGAGAGGAATG AGAGAAAAGGGAGCAAGAAAGGAACCAGGATTCAGTTGGATCAAGTATAAAAGCAAAGTTTATATTTTCTCCGCAGATGACCAGTCAAGTCCCTTTTCTG ATCAGATATATGCTGAGCTGGAGAAACTAAACCACAAGATGATAGAGGAGGGGTATGTGCCTGATGCAAGTTCAGTTCTTCATGATGTTGAAGATTCAGA GAAGATGAAGATGCTTAACCACCATAGTGAGAAGCTTGCTATTGCTTTTGGGTTATTATTTATTCCCCATGGCCTTCCTATACGAGTGGTAAAAAATCTG AGGGTGTGTGGGGATTGCCACAATGCAACTAAATATATTTCCAAGATTTCTCAGAGAGAGATACTTGTAAGAGATGCTGTCAGGTTTCATTTATTTAAAG ATGGAACATGTTCATGTGGAGATTTCTGGTGA
AA sequence Show only first row Show all	>Potri.010G136200.2 pacid=42797472 polypeptide=Potri.010G136200.2.p locus=Potri.010G136200 ID=Potri.010G136200.2.v4.1 annot-version=v4.1 MSNSSNYYSSLLKLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKSGDLSTMQEIFSIMPNR DGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQ ERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSG YNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVS GLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLK DHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGM REKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVLHDVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNL RVCGDCHNATKYISKISQREILVRDAVRFHLFKDGTCSCGDFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68930			pentatricopeptide (PPR) repeat...		Potri.010G136200 [exp]	0	1
AT5G61800			Pentatricopeptide repeat (PPR)...		Potri.012G110800 [exp]	1.00	0.9506
AT3G18840			Tetratricopeptide repeat (TPR)...		Potri.009G113500 [exp]	1.41	0.9418
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Potri.017G084900 [exp]	1.73	0.9393
AT5G52630		MEF1	mitochondrial RNAediting facto...		Potri.016G053500 [exp]	2.00	0.9281
AT4G20020			unknown protein		Potri.004G218800 [exp]	2.64	0.9186
AT3G26540			Tetratricopeptide repeat (TPR)...		Potri.002G075300 [exp]	3.46	0.9009
AT1G74350			Intron maturase, type II famil...		Potri.005G063750 [exp]	5.00	0.9259
AT3G23330			Tetratricopeptide repeat (TPR)...		Potri.001G186500 [exp]	5.29	0.8989
AT4G38440		IYO	MINIYO, unknown protein		Potri.009G139900 [exp]	6.32	0.9086
AT1G27700			Syntaxin/t-SNARE family protei...		Potri.004G090200 [exp]	6.70	0.8972

Compare expression of checked genes

Potri.010G136200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.