Plant FIBer expression Database

Potri.010G136300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G37240 62 / 7e-11 Thioredoxin superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G113000
[exp]
725 / 0 AT2G37240 62 / 1e-10 Thioredoxin superfamily protein (.1)
Potri.006G133100
[exp]
67 / 3e-12 AT2G37240 325 / 6e-113 Thioredoxin superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029111
[exp]
611 / 0 AT2G37240 61 / 2e-10 Thioredoxin superfamily protein (.1)
Lus10030582
[exp]
605 / 0 AT2G37240 64 / 3e-11 Thioredoxin superfamily protein (.1)
Lus10030907
[exp]
597 / 0 AT2G37240 64 / 3e-11 Thioredoxin superfamily protein (.1)
Lus10013051
[exp]
588 / 0 AT2G37240 60 / 4e-10 Thioredoxin superfamily protein (.1)
Lus10014017
[exp]
67 / 3e-12 AT2G37240 316 / 1e-109 Thioredoxin superfamily protein (.1)
Lus10019900
[exp]
55 / 2e-08 AT2G37240 214 / 7e-70 Thioredoxin superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0172 Thioredoxin PF13911 AhpC-TSA_2 AhpC/TSA antioxidant enzyme
Representative CDS sequence
>Potri.010G136300.1 pacid=42797478 polypeptide=Potri.010G136300.1.p locus=Potri.010G136300 ID=Potri.010G136300.1.v4.1 annot-version=v4.1
ATGGCTTCCTTTTCAGTGGAGGATTTTGTAGGTAATGGAGTTTTGAAGGACTTGCTTCCAACGTTGTTGGAAGAAGGTTGGGATGATATTCCGACTTTGA
AGATTATGAATTCAGAGGATACAGATGCAATGAACATGACACGGCAGCAAAAGGATGCGTTGGAAATCAGATCATACCTGCATGATCGTGCTCTGCTGCA
ATATGGGGATAAGCTAGAGGCCTCTGGGAAATGTTTGCCTGAGCTTCTTAGCCTAAGCACTGGGGATCTCTCCTCTCATTTTGGGATGAAGAGAGGTCAC
ATAGCCCGTTTCATGGACAGAACCGGTGCATGTGAAGATCCCTTGCTCAAATCATATGCTCCTCTCACTGCAAGGAAAATGAACAGCACAGTCTCAAGAA
ATAATAGCAATTTCAAGAGTTATTCATCTGTCAGTTCAAAAAAGATGCAAACCATTAGTAGTATGAATTATGATAAATCACTTGAACAATCACTCGCTGA
TTTTAAGATTAAAGATGGATACATCTTCAAAGGGATTGTAGCTGCAGGGCCAGCTGAGCTCAGAGCATGTGGTTGTGTACAACCTCCTCCAGTAGTTGAC
AGTGTTGCCCCTTATTCTTCTATTGAAAACATCTCAGTTCAGAAACTAACACCAGAGTATAAGATTGGGATGGAGCATTTGGTGAAAACCAAGACACCTC
CAATGAAGGCTGTAGAATTATGGCGAGATAAACCAGCTGTAATCCTTTGCATCAGGCGACCTGGGTGCATCATGTGCAGGGCTGAAGCTCACCAGCTTTA
TGCCAAAAAACCCATATTTGATGCACTGGGAATTCGATTATTTGCAGTTCTCCATGAACATATAGAGTCAGAGGTAAAAGACTTCTGGCCTCGATATTGG
GGTGGTGTTGTGCTCTTCGATAGGAGTATGGAGTTCTTCAAAGCTCTTGGTGGTGGGCAGCTGCTTAGGGACAAATTTATATCAGGATTTATTTTCAACC
CCCGAGCTATTGCAAATTACAAGCGTGCAAAAGCTATGGGAATTGATCAAAACTTCAAAGGAGAAGGTGAAATAAAGGGTGGCCTCTTTATAGTTGGAAG
GGATAAGAGTGGCATAGCTTATCAGTTTATTGAAAGGAACTTTGGTGATTGGGCTCCTGTAGCTGAAGTAATTGACATATGTAGCAAGTTGCGGGTTTCT
TAG
AA sequence
>Potri.010G136300.1 pacid=42797478 polypeptide=Potri.010G136300.1.p locus=Potri.010G136300 ID=Potri.010G136300.1.v4.1 annot-version=v4.1
MASFSVEDFVGNGVLKDLLPTLLEEGWDDIPTLKIMNSEDTDAMNMTRQQKDALEIRSYLHDRALLQYGDKLEASGKCLPELLSLSTGDLSSHFGMKRGH
IARFMDRTGACEDPLLKSYAPLTARKMNSTVSRNNSNFKSYSSVSSKKMQTISSMNYDKSLEQSLADFKIKDGYIFKGIVAAGPAELRACGCVQPPPVVD
SVAPYSSIENISVQKLTPEYKIGMEHLVKTKTPPMKAVELWRDKPAVILCIRRPGCIMCRAEAHQLYAKKPIFDALGIRLFAVLHEHIESEVKDFWPRYW
GGVVLFDRSMEFFKALGGGQLLRDKFISGFIFNPRAIANYKRAKAMGIDQNFKGEGEIKGGLFIVGRDKSGIAYQFIERNFGDWAPVAEVIDICSKLRVS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G37240 Thioredoxin superfamily protei... Potri.010G136300
[exp]
0 1
AT3G23730 XTH16 xyloglucan endotransglucosylas... Potri.011G077320
[exp]
7.34 0.8914
AT3G51680 AtSDR2 short-chain dehydrogenase/redu... Potri.019G125600
[exp]
8.48 0.9065
AT3G62760 ATGSTF13 Glutathione S-transferase fami... Potri.014G132200
[exp]
16.15 0.8818 Pt-ATGSTF13.1
AT5G39820 NAC ANAC094 NAC domain containing protein ... Potri.004G126901
[exp]
25.76 0.8662
AT3G20898 unknown protein Potri.006G053600
[exp]
28.46 0.8688
Potri.017G122100
[exp]
34.56 0.8718
AT5G42650 CYP74A, AOS, DD... DELAYED DEHISCENCE 2, CYTOCHRO... Potri.004G149000
[exp]
36.18 0.8639 Pt-AOS.4,CYP74C7-1
Potri.017G102200
[exp]
37.78 0.8636
AT1G50720 Stigma-specific Stig1 family p... Potri.001G356600
[exp]
38.57 0.8588
AT4G27745 Yippee family putative zinc-bi... Potri.014G101600
[exp]
38.65 0.8647

Potri.010G136300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.