Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68940 913 / 0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT1G20780 442 / 8e-141 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT1G76390 437 / 1e-138 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT5G42340 91 / 2e-18 PUB15 Plant U-Box 15 (.1) AT2G28830 87 / 4e-17 AtPUB12 PLANT U-BOX 12 (.1) AT3G46510 86 / 9e-17 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G54850 77 / 3e-14 ATPUB14 plant U-box 14 (.1) AT1G10560 76 / 9e-14 ATPUB18 ARABIDOPSIS THALIANA PLANT U-BOX 18, plant U-box 18 (.1) AT1G23030 76 / 1e-13 PUB11 ARM repeat superfamily protein (.1) AT1G71020 74 / 2e-13 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G112900 [exp] 1536 / 0 AT1G68940 927 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.005G253400 [exp] 506 / 5e-165 AT1G76390 963 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.002G007800 [exp] 499 / 2e-162 AT1G76390 1028 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.002G175800 [exp] 203 / 2e-53 AT1G76390 201 / 2e-53 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.014G102000 [exp] 181 / 1e-46 AT1G76390 207 / 1e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.012G019900 [exp] 174 / 2e-44 AT1G76390 206 / 3e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.010G079200 [exp] 159 / 2e-39 AT1G20780 158 / 1e-39 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.001G069501 [exp] 115 / 7e-26 AT1G68940 132 / 5e-31 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.009G165900 [exp] 97 / 2e-20 AT5G42340 671 / 0.0 Plant U-Box 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013050 [exp] 1045 / 0 AT1G68940 900 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10029113 [exp] 723 / 0 AT1G68940 572 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10013216 [exp] 489 / 2e-156 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030734 [exp] 370 / 4e-115 AT1G76390 854 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10029112 [exp] 192 / 1e-55 AT1G68940 214 / 5e-64 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10018246 [exp] 201 / 1e-52 AT1G76390 272 / 8e-78 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10040659 [exp] 199 / 6e-52 AT1G76390 286 / 1e-82 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10005988 [exp] 171 / 2e-43 AT1G76390 244 / 4e-68 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030224 [exp] 144 / 6e-35 AT1G20780 127 / 1e-29 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Lus10039402 [exp] 120 / 3e-27 AT1G76390 157 / 4e-39 plant U-box 43, ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.010G136500.1 pacid=42796919 polypeptide=Potri.010G136500.1.p locus=Potri.010G136500 ID=Potri.010G136500.1.v4.1 annot-version=v4.1 ATGTACCTGGAAGGCATCAGAAGTGGTAGCTCTGGTTCGATGTCGCTCAGCAAAGATTCAACTGCTATGGCTAGTGTTGCTGAATCCTTGCTGACATCAA TTTCAGAGATCATTGAATCTGTAACTTGCATAGAACAAGAAAAGGAAAGCTTTGCTGAAATTGGATGCTACCTCTACCGAGTTTTCCCAGTCATAATGGA GTTGCAGACAACTGAGCACACCCCGAAAAATGCAATGGTGATCCTTCAATCCCTATCCAGAAGCATCACTGAGGCCAAGGATCTTGTAAACAAATGTCAA AGAGGCACCAACTCAAATTTTGATTCTGAATTGAAAAGCACCATATCACTGCTGGAAAGGGTGATAGAAGACATGGGCGAATGCTTGAGCTCGATACCTT CATCAACATTTCAGGACCAAGAATATGCAGAAGTTGCTGTCCAAGCTCTTTCAAATGAAATGCGAAGTGCTCATTTTGAAGTTGGCCAAAGCCAAGCATT GCAGACCAAAGAGCTGGATCCACACAAGTCTTTCTCGGAGGAGGAACCAAACGAAGAACCTGTAATGGTAGAATCAGATCTCTACCCTGTCAGTCTTGAA GTGTCCACAGATAATTCCCGGTTCTTAAATACCCCACACTTCATAGAAATCCAGAAACCCACAAGTTTCAACAGGCAAAGGAAACGCAGCAGCAGCAGCT CATCAACATCATTGCTAAAGATGACCGAGTACATAGAGCCAATGTATGAAACTTTCTTCTGTCCGTTAACAAAGCAGATTATGGATGATCCAGTTACCAT ACAAAGTGGAGAGACATATGATAGGAAAGCAATTACCAAGTGGTTGGAAGAGTCCGAGAACTCACAAGAAATTTTCTGCCCAATTACAGGGAAGAAGCTG TTGAGTAGAGTTCTAAGGACAAACGTAGCTCTGAAGACCACAATAGAGGAATGGAAAGAAAGAAATGAAGTGGCAAGGATAAAATGTTCCCGTTCAGCTT TAGTTTTGTCCGCTTCACCAAGTATGGTTCTTGAAGCAATAAGAGATTTGCAAGAAATTTGCAAAAGGAAACAACATAACAAGATACAAGTTCACAATGC TGGAATACTTCCATTGCTTTTTAAGCTTCTGGAGTACAGAGATAGAGATGTTATCTATGAAGCGCTGGAGTTATTACGAGAATTGACCAAAGAGGACGAT GTTTCCAAGATGGTGATTTCTGAAATGGTCGACATTTCAACAGTAATCAAGATGATGTCAATTGGTCACCGGCCCATAAGGCATGCGGCATTACTGTTAT TACTTGAGATATCAAGGTCCCAATCATTATGGGAAAAGATTGGGTCAGTTCCTGGAGGAATTCTGATGCTAATCAGAATTAAATATAATCTGTCTGTCGA TGCCTTCTCTTCAGAAACAGCAGATGAAATCTTAAGGAATCTAGAGAGGTCTCCAGAAAATATCAAGATGATGGCGGAAAATGGATTCTTGGAACCCCTT CTAAAGCATCTCACTGAAGGTACTGAGGAGATGCAGACAGAAATGGCAGGATACCTTGGGGAAATTGCACTAGGACATGACAGCAAAACTTATGTGGCTG AGAGGGCCTCTCCTGCTCTCATCAAAATGGTGCATAGTGGAAACACTATGACCAGAACAGCGGCATTCAAAGCTCTAGCACAGATTTCATCCTACCATCC TAACGCCAAAATACTTGCAAAATCTGGAATTATTCAAATCATGGTTGAAGAGATGCTCACTCGAAGAATCAATGGTGAACCAATTAACTCAAAAGGTGAA GCTGCTGCAATACTTGCAAATATATTTGAGGCTGGGATCGACCTTGAGAACCTCCAAGTAAATTATCACGGATTAGCTTCAGACTATGTTCTGTATAACA TCATTGACATGATCAAACATTCCACTCCTGTTGAACTCAACATCAATCTCATTAGAGTTCTTTTGTGCCTGACAAAGTCTCCCAAATCAATGGGCACCAT TGTCTCCATGGTCAAAGAGATTGAAGCAAGCAACACCCTGGTTGAACTCCTCAATAATCCCCATGCAGAACTTGGGATCGTAGCAATCAAGCTACTCATG GCGCTCATACCTTACATGGGACACTCTATAGCAGAGAGACTATGCAGAACTGCAGGGCAACCTGAGAACCTAATCCTTGGCCAAAATGAAACAGGCCGAA TCACACAGAAGCAGGCAGTTTCAGCAACATTTCTTGCTAAACTCCCCCACCAGAGCCTGACACTAAATCTCGCTCTTCTCAGCAAGAACACAGTCCCTGC AATCCTACAACAAATCAATCAAATCCAAAGAACTGGTATAAGAACAAGCAGGTATGCAATTCCTTACTTGGAAGGACTTGTGGGCATTCTAGTCAGATTC ACAACCACACTTTACGAACCTCGAATTCTGTTTCTAGCAAGAAACTACAACTTCACCTCAGTACTTACAGAAATGCTCATGAAAACATCAAGTGATGAAG TTCAGAGGTTAGCAGCAGTTGGCTTGGAGAATCTCTCATTGGAATCGATAAGTCTATCAAAACCACCAGTAATAAAGAAAACCAAGTTCTTGAAACTCTT CTACCCACCAAAATTCCTATTTTCTGGATCATCAAAGAAGAGAAAACTACCAGTCTGCCCGGTTCATAGAGGGGCTTGTTCCTCGCAAAACACATTCTGC TTAGTTGATGCAAAAGCAGTGGAGAGATTGCTGGCATGTTTGGACCACGAGAATGTTGAGGTTGTTGAAGCTGCATTGTCAGCAATATGTACTTTGTTAG ATGACAAAGTCGATGTCGACAAGAGTGTTGGCATGTTGTGTGAAGTGAATGCCACGCAGCATGTTCTGAACGTTGTGAAAGAGCACAAGGGAGAAGGTTT GCGGAAAAAATCCTTCTGGTTAATTGATAGATTCTTGCTGAAAGGAGGGAAAAGGCCTGCTTCAGATATATCACAGGACAGGTTGCTACCTGCCACTTTG GTCAGTGCTTTCCACCATGGAGATATTGATACAAGGCAGATGGCTGAGAAGATCCTACGGCATTTGAATAAGATGCCTGATTTCCCTACTTCCCACTATA CCATGTAG
AA sequence Show only first row Show all	>Potri.010G136500.1 pacid=42796919 polypeptide=Potri.010G136500.1.p locus=Potri.010G136500 ID=Potri.010G136500.1.v4.1 annot-version=v4.1 MYLEGIRSGSSGSMSLSKDSTAMASVAESLLTSISEIIESVTCIEQEKESFAEIGCYLYRVFPVIMELQTTEHTPKNAMVILQSLSRSITEAKDLVNKCQ RGTNSNFDSELKSTISLLERVIEDMGECLSSIPSSTFQDQEYAEVAVQALSNEMRSAHFEVGQSQALQTKELDPHKSFSEEEPNEEPVMVESDLYPVSLE VSTDNSRFLNTPHFIEIQKPTSFNRQRKRSSSSSSTSLLKMTEYIEPMYETFFCPLTKQIMDDPVTIQSGETYDRKAITKWLEESENSQEIFCPITGKKL LSRVLRTNVALKTTIEEWKERNEVARIKCSRSALVLSASPSMVLEAIRDLQEICKRKQHNKIQVHNAGILPLLFKLLEYRDRDVIYEALELLRELTKEDD VSKMVISEMVDISTVIKMMSIGHRPIRHAALLLLLEISRSQSLWEKIGSVPGGILMLIRIKYNLSVDAFSSETADEILRNLERSPENIKMMAENGFLEPL LKHLTEGTEEMQTEMAGYLGEIALGHDSKTYVAERASPALIKMVHSGNTMTRTAAFKALAQISSYHPNAKILAKSGIIQIMVEEMLTRRINGEPINSKGE AAAILANIFEAGIDLENLQVNYHGLASDYVLYNIIDMIKHSTPVELNINLIRVLLCLTKSPKSMGTIVSMVKEIEASNTLVELLNNPHAELGIVAIKLLM ALIPYMGHSIAERLCRTAGQPENLILGQNETGRITQKQAVSATFLAKLPHQSLTLNLALLSKNTVPAILQQINQIQRTGIRTSRYAIPYLEGLVGILVRF TTTLYEPRILFLARNYNFTSVLTEMLMKTSSDEVQRLAAVGLENLSLESISLSKPPVIKKTKFLKLFYPPKFLFSGSSKKRKLPVCPVHRGACSSQNTFC LVDAKAVERLLACLDHENVEVVEAALSAICTLLDDKVDVDKSVGMLCEVNATQHVLNVVKEHKGEGLRKKSFWLIDRFLLKGGKRPASDISQDRLLPATL VSAFHHGDIDTRQMAEKILRHLNKMPDFPTSHYTM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68940			Armadillo/beta-catenin-like re...		Potri.010G136500 [exp]	0	1
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.002G174500 [exp]	1.00	0.9890
AT1G30760			FAD-binding Berberine family p...		Potri.001G463400 [exp]	1.41	0.9868
AT4G14746			unknown protein		Potri.005G051900 [exp]	1.73	0.9855
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Potri.016G027800 [exp]	2.23	0.9830
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125000 [exp]	3.46	0.9805
AT1G66120			AMP-dependent synthetase and l...		Potri.016G034800 [exp]	4.00	0.9837
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G191400 [exp]	5.29	0.9783
AT4G30170			Peroxidase family protein (.1)		Potri.018G089900 [exp]	6.32	0.9762
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Potri.007G009400 [exp]	6.63	0.9751
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413800 [exp]	7.07	0.9675

Compare expression of checked genes

Potri.010G136500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.