Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G14390 403 / 6e-140 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 401 / 2e-139 alpha/beta-Hydrolases superfamily protein (.1) AT1G13610 398 / 3e-138 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G24760 389 / 2e-134 alpha/beta-Hydrolases superfamily protein (.1) AT5G38220 342 / 1e-116 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT4G31020 322 / 3e-109 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G66900 321 / 4e-109 alpha/beta-Hydrolases superfamily protein (.1) AT2G24320 316 / 4e-107 alpha/beta-Hydrolases superfamily protein (.1) AT1G32190 281 / 2e-91 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G112600 [exp] 668 / 0 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G112300 [exp] 481 / 1e-170 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G102500 [exp] 466 / 1e-164 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G340000 [exp] 423 / 1e-147 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G087100 [exp] 416 / 5e-145 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G090800 [exp] 414 / 3e-144 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G117633 [exp] 364 / 6e-125 AT5G38220 468 / 9e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.004G097300 [exp] 358 / 2e-122 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.006G188100 [exp] 320 / 2e-108 AT4G31020 440 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035148 [exp] 480 / 5e-170 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031953 [exp] 473 / 2e-167 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036842 [exp] 432 / 7e-151 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10022307 [exp] 400 / 4e-138 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10042075 [exp] 394 / 2e-136 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10018081 [exp] 399 / 3e-131 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10000544 [exp] 358 / 3e-122 AT3G01690 488 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10033575 [exp] 341 / 6e-116 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10017617 [exp] 337 / 4e-114 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10040038 [exp] 322 / 6e-109 AT4G31020 491 / 3e-177 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.010G136900.1 pacid=42797498 polypeptide=Potri.010G136900.1.p locus=Potri.010G136900 ID=Potri.010G136900.1.v4.1 annot-version=v4.1 ATGGGTACAGCAACATCATCCATGGCAGCGAAATTTGCTTTCTTTCCACCAAATCCACCATCTTACACCATATTAGTGGATGAAGAAACTGGAAAGCTCA GGCTCTCGTCAGACGTAATCCACCAGAGGGACAACGTGGATATTCTGAAGTTATGTACCAAGAAAGGCAATGAGATTGTTGCTACGTACGTGAAGAATCC TTCAGCTTCATTGACAGTGTTGTATTCTCATGGCAATGCTGCTGATATTGGCCAGATGTATCATATTTTCACTGAGCTTAGCTCGCACCTTAATGTTAAT CTTATGGGGTATGATTATTCTGGCTATGGACAGTCTTCTGGAAAGCCAAGCGAGCATGACACCTACTCTGACATAGAGGCTGCGTATAAATGCCTTGAAG AGACATATGGAGTGAAGGAGGAAGACATTATATTGTATGGCCAGTCAGTAGGGAGCGGACCTGCTCTTGAATTGGCTACTCATTTGCCTGGACTGAGGGC TGTAATTCTTCACAGCCCTATCCTGTCTGGCCTTCGAGTCATGTATCCTATCAAGAAAACTTTCTGGTTCGACATTTACAAGAATATTGATAAAATTCCG CTAGTCAATTGTCCAGTTCTTGTAATTCATGGAACAGAAGATGAAGTTGTGAATTTCTCTCATGGGAAGCAGCTTTGGGAGCTTTGCAAAGAGAAGTATG AACCACTGTGGCTCAAAGGAGGAAACCACTGCAATCTGGAACTCTACCCAGAGTACTTGAAGCATCTCAAGAAGTTCATATCTGCCATCGAAAAACTGCC GCCGCATGTATCTGCACAAAGTACAGATCAACCTGAACAACCCTTGAATGCAGCAGGATACAACGCGGAGAAGCCAAGGCCAAGCTCAGATCATAAAGAG AAGGCTAGGCCTAGTTTTGGACAGAGAGAAAAATCCAGGCTAAGCACAGACAATAGAGAGAAAGCAAGAGCCAGCACTGACAGAAGAGAGAGGACGCGAA AGAGCATTGATCGCGTGGGGAAAGCAAGAAATAGCACAGATCAGCAAGAGAAAGCGAGGAACAGCTTCGACCGGTTGGGAGACATGGTGAGGTCTGTTGG ATTGTGCAACGTTGATTGTCTTAAGCAGACAGCTGCCGAGGCCTGA
AA sequence Show only first row Show all	>Potri.010G136900.1 pacid=42797498 polypeptide=Potri.010G136900.1.p locus=Potri.010G136900 ID=Potri.010G136900.1.v4.1 annot-version=v4.1 MGTATSSMAAKFAFFPPNPPSYTILVDEETGKLRLSSDVIHQRDNVDILKLCTKKGNEIVATYVKNPSASLTVLYSHGNAADIGQMYHIFTELSSHLNVN LMGYDYSGYGQSSGKPSEHDTYSDIEAAYKCLEETYGVKEEDIILYGQSVGSGPALELATHLPGLRAVILHSPILSGLRVMYPIKKTFWFDIYKNIDKIP LVNCPVLVIHGTEDEVVNFSHGKQLWELCKEKYEPLWLKGGNHCNLELYPEYLKHLKKFISAIEKLPPHVSAQSTDQPEQPLNAAGYNAEKPRPSSDHKE KARPSFGQREKSRLSTDNREKARASTDRRERTRKSIDRVGKARNSTDQQEKARNSFDRLGDMVRSVGLCNVDCLKQTAAEA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.010G136900 [exp]	0	1
AT2G44150		SDG7, ASHH3	SET DOMAIN-CONTAINING PROTEIN ...		Potri.017G000400 [exp]	1.73	0.7536
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Potri.011G040900 [exp]	3.74	0.6936
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Potri.004G143400 [exp]	7.07	0.6759
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.005G173400 [exp]	11.22	0.7188
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Potri.011G165200 [exp]	12.80	0.7034
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Potri.001G019600 [exp]	15.58	0.6807
AT3G24110			Calcium-binding EF-hand family...		Potri.001G314900 [exp]	17.88	0.6319
AT1G75060			unknown protein		Potri.001G101600 [exp]	18.30	0.6979
AT3G08840			D-alanine--D-alanine ligase fa...		Potri.006G106000 [exp]	19.59	0.6820
AT5G01030			Protein of unknown function (D...		Potri.006G093600 [exp]	21.02	0.6504

Compare expression of checked genes

Potri.010G136900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.