Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71691 221 / 3e-69 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G15720 210 / 5e-65 GLIP7 GDSL-motif lipase 7 (.1) AT2G03980 209 / 9e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 207 / 6e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 204 / 1e-62 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 196 / 1e-59 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G10950 189 / 2e-56 SGNH hydrolase-type esterase superfamily protein (.1) AT2G23540 186 / 2e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 179 / 4e-53 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 177 / 3e-52 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G112700 [exp] 256 / 6e-83 AT5G15720 249 / 7e-80 GDSL-motif lipase 7 (.1) Potri.017G102100 [exp] 252 / 1e-81 AT5G15720 264 / 5e-86 GDSL-motif lipase 7 (.1) Potri.013G102500 [exp] 217 / 1e-67 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G076600 [exp] 215 / 5e-67 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.011G089700 [exp] 190 / 2e-57 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 190 / 2e-57 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.003G141300 [exp] 187 / 6e-56 AT4G10950 535 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.008G104600 [exp] 185 / 3e-55 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024600 [exp] 184 / 7e-55 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016929 [exp] 212 / 2e-65 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10005236 [exp] 188 / 2e-56 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016918 [exp] 188 / 4e-56 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039152 [exp] 187 / 4e-56 AT1G71250 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 184 / 7e-55 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10022471 [exp] 184 / 1e-54 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000893 [exp] 183 / 1e-54 AT1G33811 504 / 3e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 182 / 2e-54 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016775 [exp] 182 / 5e-54 AT2G23540 592 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 181 / 1e-53 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.010G137100.2 pacid=42798568 polypeptide=Potri.010G137100.2.p locus=Potri.010G137100 ID=Potri.010G137100.2.v4.1 annot-version=v4.1 ATGGTAAAAGCTCTGATATTGTGCTCTGTTTCTCTATCTCTTCTCCTTCTCTTTCAGCTTTTCTCTATCTGTGGCAATGCTAAGAACACAAAGCTTGTTC CAGCCTTGTATATCTTCGGTGATTCCACCGTAGATGCAGGAAACAATAATAATCTTTCAACAACAGCCAGAGCAATTTCTCTTCCTTATGGCATTGACTT CAATCATACTGCAACCGGACGTTTCACTAATGGCTTGACTGTGCCTGACTATTTTGCGAGATTTCTTGGTTTACCCTTTGCACCTCCTTATATGAATCTT TCTGAACTCGAGAGACGTACGACAACTACCGGATTGAATTTTGCATCTGCCTCGTCTGGTATCCTGCCGGAAACTGGATCTTTTACGGGATCCCCCTTGA CCTTGGACAACCAGACAGATTTATTCAAAATTACTGCAAAGACGTTGGATGTGCAGAACATTAAAGTGCATTTGGCCAAATCCATCTTCTTTATCTCCAT CGGTTCCAATGACTACATCATGAATTATCGTAACATCGCATCTAAAATGAACAAGCTTTTCTCACCAGATTATTTTGCCAAATTCCTAACAGAGGAACTT GTCAAACGCTTGAAGAAACTTTATTTGATAGGTGCTAGGAAGTTTGTGGTGACCGGCCTTGGACCGGTAGGATGCATCCCGGCAATTGCCAAGTCAACTC CACATGAAGGCGACTGTGCTGAATCATTCAACCAAGCCCTGCTATCCTACAACAAGGAGCTCTTCATGAAGCTATCAAAGTTGCAATCTCAACTCTATGG CTCTTTCTTCGTACACACGGACACTTTCAAGTTCTTACACGAACTGAAGGAAAATAAGGAAAAATATGGAATAACAGATACCCAGAATGCTTGCTGGGAT GGAAAACACGATCCATGCGCGGTGCGGGACAGATACATCTATTTTGATTCAGCTCACCCATCTCAGATTACTAATTCAATCTTTGCAGGTCGTTGTTTTA ACGAGTCATCAATATGCACTCCCATGAATGTTATGCAACTTGTATCAGCTTGA
AA sequence Show only first row Show all	>Potri.010G137100.2 pacid=42798568 polypeptide=Potri.010G137100.2.p locus=Potri.010G137100 ID=Potri.010G137100.2.v4.1 annot-version=v4.1 MVKALILCSVSLSLLLLFQLFSICGNAKNTKLVPALYIFGDSTVDAGNNNNLSTTARAISLPYGIDFNHTATGRFTNGLTVPDYFARFLGLPFAPPYMNL SELERRTTTTGLNFASASSGILPETGSFTGSPLTLDNQTDLFKITAKTLDVQNIKVHLAKSIFFISIGSNDYIMNYRNIASKMNKLFSPDYFAKFLTEEL VKRLKKLYLIGARKFVVTGLGPVGCIPAIAKSTPHEGDCAESFNQALLSYNKELFMKLSKLQSQLYGSFFVHTDTFKFLHELKENKEKYGITDTQNACWD GKHDPCAVRDRYIYFDSAHPSQITNSIFAGRCFNESSICTPMNVMQLVSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Potri.010G137100 [exp]	0	1
AT3G11800			unknown protein		Potri.004G146800 [exp]	15.36	0.6992
AT1G53035			unknown protein		Potri.001G399900 [exp]	18.49	0.7937
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Potri.015G008300 [exp]	20.42	0.7739
AT4G29210		GGT4, GGT3	gamma-glutamyl transpeptidase ...		Potri.018G069450 [exp]	23.91	0.7029
AT4G32870			Polyketide cyclase/dehydrase a...		Potri.008G063900 [exp]	29.66	0.7634
AT4G30310			FGGY family of carbohydrate ki...		Potri.018G095700 [exp]	30.29	0.7025
AT3G04280		ARR22	response regulator 22 (.1.2.3)		Potri.003G172200 [exp]	31.49	0.7658
AT1G26090			P-loop containing nucleoside t...		Potri.008G115401 [exp]	32.40	0.7638
AT5G17990		PAT1, TRP1	PHOSPHORIBOSYLANTHRANILATE TRA...		Potri.012G082700 [exp]	38.07	0.7267
AT5G44400			FAD-binding Berberine family p...		Potri.011G161600 [exp]	38.57	0.7063

Compare expression of checked genes

Potri.010G137100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.