Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13630 803 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G39710 297 / 1e-88 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59900 298 / 9e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 301 / 2e-87 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63400 283 / 3e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 283 / 1e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 277 / 9e-83 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 277 / 2e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 276 / 4e-82 RPF2 rna processing factor 2 (.1) AT3G53700 278 / 1e-81 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G046000 [exp] 315 / 3e-96 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G276500 [exp] 307 / 1e-92 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 310 / 4e-91 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 296 / 2e-88 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G234500 [exp] 291 / 1e-86 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 290 / 3e-86 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G040200 [exp] 290 / 8e-85 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G217600 [exp] 286 / 2e-84 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G098400 [exp] 286 / 2e-84 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019200 [exp] 886 / 0 AT1G13630 690 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10036836 [exp] 879 / 0 AT1G13630 689 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10036839 [exp] 865 / 0 AT1G13630 673 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10036020 [exp] 307 / 7e-92 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 284 / 8e-85 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10008650 [exp] 288 / 1e-84 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10038974 [exp] 283 / 8e-84 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 290 / 1e-83 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008185 [exp] 287 / 2e-83 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 282 / 4e-83 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.010G137200.4 pacid=42797672 polypeptide=Potri.010G137200.4.p locus=Potri.010G137200 ID=Potri.010G137200.4.v4.1 annot-version=v4.1 ATGCTCAACAAATGGACCAGGTCACTCTATTTTCCCGTTAAATCCCCAATTCTTACCTCTCTCTCCTCCCTCATCTTCTCTAAACTCTCTATCTCCTCCG CTGCCAATCTCGATACCACCACCATCAACACCACCACCCCTCTTGTTCAAATCTCAACGGACCCAGTTCACGCCATTCTCTCTGGCTTTAGGGACCTGGG TTTTAGACAATTTGTCAGTGGTCATTACTTCAAAGACTTGGTTTTAATGTTAAATCAGGCTCAAATGGATGATGTGATTGAGAATTTGAGCGTCCAGAAT GCGGATTTTGTGGCGGATTTCTATCATTTGTCAAGGAATGAGTTTGGATTCCAACATTCGAGAGTTTCTAGGTTTTTGGTTTCTCATGTTTTGGCGCGAA AGAGAAGGTTTAAGGACTTGCGTTTGGTTTTGGATCAAATGCTTCAAGAGGAAGGCACTGGGTCAGCTCCTTTGCTTTGTAAGCTGCTTTTCAGTAGCTT CAAGGGTTGGGATTCGAGCAATGTGGTATGGGATATGTTGGCTTTTATTTATTCGAGATTTGAGATGGTTCATGATGCTCTTTTTGTTCTCGTGAAGATG AAAGAACAGAATTTGCGACCATCGATACAGACGTACAACAGTTTGTTGTACAACTTGAGGCACACTGATATTATGTGGGATGTCTACAATGATATCAAAG ACAGTGGCACTCCACAGAGTGCTCGCACTAGTTCCATAATTGTAGATGGGCTATGCGGACAGTCTAGATTTCGAGATGCAGTTTTGTTCCTGCGGCAGAA TGATGGGAAGGAGTTTGCACCTTCTGTTGTTTCTTTTAATACCATCATGTCAAGGTACTGTAAGTTAGGTTTAGCTGATGTTGCAAAATCTTTTTTCTGT ATGATGCTCAAATATGGAATACTTCCCGACACATACAGTTACAATATACTTATTCATGGGTTGATTGTAGCTGGTTCCATGGAAGAAGCTTTGGAGCTCA CAAATGACATGGAGAAGCAGGGTTTACAGCCTGATATGGTAACTTACAAAATTGTTGCCAAAGGTTTCCATCTACTTGGTTTGATGAGTGGGGCCCGGGA GATCATTCAGAAGATGTTAACTGATGAAGGGCTAAAGCCAGATCTTGTTACCTATACAGTTCTAATATGCGGGCATTGCCAAATGGGAAATATTGAGGAA GCATTAAGGTTGAGAAGGGATCTGCTTTCAAGCGGTTTTCAGTTGAATGTCATTTTATACAGTGTGTTGCTCAGCAGCTTGTGTAAACGTGGACAAGTTG ATGAAGCATTGCAATTGCTTTATGAAATGGAAGCCAACAACTTGCAACCAGATCTTGTTACATATTCTATCCTTATTCATGGCCTCTGCAAGCAAGGAAA AGTCCAACAGGCCATACAACTATATAAAGAAATGTGCTTCAACAGAATCTTTCCAAATTCTTTTGCCCACAGCGGTATTCTAAAGGGTCTTTGTGAGAAA GGGATGTTATCAGACGCCAGGATGTATTTTGACTCTCTGATAATGAGTAACTTGAGGCCTGATGTCACTCTGTATAATATCATGATCGATGGGTATGTAA AACTTGGTGATGTTGAAGAGGCTGTCCGATTATACAAGAGGTTGAGAGACAAAGCAATAACTCCTAGTATAGTAACTTTTAATTCTCTTATTTATGGATT CTGCAAAAACAGAAAGGTTGTTGAGGCTAGAAGGTTGTTGGAATCAATCAAGCTGCATGGATTGGAACCAAGTGCAGTAACTTATACCACTCTCATGAAT GCATACTGTGAAGAGGGTAATATAAACAAGTTGCATGAATTGCTGCTTGAGATGAATTTAAAAGACATAGAACCTACTGTTGTCACTTACACTGTAGTAA TCAAAGGACTGTGCAAACAACGGAAATTAGAAGAATCTGTCCAATTACTAGAGGATATGCGTGCTAAAGGCCTAGCTCCAGATCAAATTACATACAATAC AATCATTCAGTGTTTCTGCAAGGCTAAAGACATGAGAAAAGCATTTGAATTACTTGATGACATGTTGATTCATAACCTAGAGCCTACTCCTGCTACATAT AATGTTCTCATTGATGGCCTTTGTCGATATGGTGATGTAGAGGATGCTGACCGTGTACTGGTTTCTCTTCAGGACCGAAATATCAACTTGACAAAAGTTG CTTACACCACAATGATCAAAGCACATTGCGTCAAGGGTGATGCACAACGAGCAGTGAAGGTGTTCCATCAAATGGTGGAGAAGGGGTTTGAAGTATCGAT CAAAGATTATAGTGCCGTGATTAATAGATTATGCAAGAGATGTCTAATAAATGAAGCCAAGTACTATTTCTGTATTATGTTATCTGATGGTGTTTCCCCT GATCAAGAAATATTTGAAATGATGCTTAATGCCTTTCACAGAGCTGGCCATGTCCACTCGGTGTTTGAACTACTAGCTGTGATGATCAAATTCGGGTTAC TGCATGATTAA
AA sequence Show only first row Show all	>Potri.010G137200.4 pacid=42797672 polypeptide=Potri.010G137200.4.p locus=Potri.010G137200 ID=Potri.010G137200.4.v4.1 annot-version=v4.1 MLNKWTRSLYFPVKSPILTSLSSLIFSKLSISSAANLDTTTINTTTPLVQISTDPVHAILSGFRDLGFRQFVSGHYFKDLVLMLNQAQMDDVIENLSVQN ADFVADFYHLSRNEFGFQHSRVSRFLVSHVLARKRRFKDLRLVLDQMLQEEGTGSAPLLCKLLFSSFKGWDSSNVVWDMLAFIYSRFEMVHDALFVLVKM KEQNLRPSIQTYNSLLYNLRHTDIMWDVYNDIKDSGTPQSARTSSIIVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFC MMLKYGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEE ALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEK GMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMN AYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATY NVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSP DQEIFEMMLNAFHRAGHVHSVFELLAVMIKFGLLHD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13630			Tetratricopeptide repeat (TPR)...		Potri.010G137200 [exp]	0	1
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Potri.002G160600 [exp]	2.00	0.8909
AT5G32470			Haem oxygenase-like, multi-hel...		Potri.019G022700 [exp]	9.48	0.8247
AT3G26000			Ribonuclease inhibitor (.1)		Potri.008G179800 [exp]	11.04	0.8372
AT3G47890			Ubiquitin carboxyl-terminal hy...		Potri.017G089250 [exp]	11.48	0.8214
AT1G15110		PSS1	phosphatidylserine synthase 1,...		Potri.010G117500 [exp]	11.74	0.7531
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Potri.018G142400 [exp]	13.22	0.7901
AT3G57220			Glycosyl transferase family 4 ...		Potri.006G045700 [exp]	17.32	0.8370
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Potri.001G055201 [exp]	20.19	0.8301
AT3G27440		UKL5	uridine kinase-like 5 (.1)		Potri.017G071200 [exp]	30.74	0.8214
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Potri.015G129200 [exp]	32.31	0.7591	Pt-IRE.2

Compare expression of checked genes

Potri.010G137200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.