Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69010 325 / 4e-111 bHLH bHLH102, BIM2 BES1-interacting Myc-like protein 2 (.1) AT5G08130 170 / 1e-49 bHLH BIM1, bHLH046 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT5G38860 164 / 1e-48 bHLH bHLH141, BIM3 BES1-interacting Myc-like protein 3 (.1) AT5G67110 57 / 2e-09 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G63650 56 / 2e-08 bHLH EGL1, ATMYC-2, EGL3 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G41315 56 / 2e-08 bHLH MYC6.2, GL3 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G34530 54 / 5e-08 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT5G58010 54 / 6e-08 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT1G09530 53 / 1e-07 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT2G24260 53 / 1e-07 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G112000 [exp] 543 / 0 AT1G69010 292 / 4e-98 BES1-interacting Myc-like protein 2 (.1) Potri.015G048000 [exp] 249 / 6e-78 AT5G08130 359 / 3e-117 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.012G065000 [exp] 245 / 7e-77 AT5G08130 352 / 7e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.004G112900 [exp] 218 / 4e-69 AT1G69010 186 / 1e-56 BES1-interacting Myc-like protein 2 (.1) Potri.017G101700 [exp] 210 / 5e-66 AT1G69010 184 / 5e-56 BES1-interacting Myc-like protein 2 (.1) Potri.002G054100 [exp] 59 / 2e-09 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G208600 [exp] 57 / 1e-08 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G135600 [exp] 55 / 3e-08 AT5G58010 189 / 1e-56 LJRHL1-like 3 (.1) Potri.002G124400 [exp] 55 / 3e-08 AT4G36930 154 / 6e-44 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026684 [exp] 336 / 4e-115 AT1G69010 276 / 6e-92 BES1-interacting Myc-like protein 2 (.1) Lus10004630 [exp] 312 / 1e-105 AT1G69010 257 / 2e-84 BES1-interacting Myc-like protein 2 (.1) Lus10034358 [exp] 169 / 1e-49 AT1G69010 168 / 1e-49 BES1-interacting Myc-like protein 2 (.1) Lus10007974 [exp] 167 / 4e-47 AT5G08130 330 / 1e-106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10013502 [exp] 164 / 3e-46 AT5G08130 330 / 6e-107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10005091 [exp] 149 / 4e-41 AT1G69010 149 / 5e-41 BES1-interacting Myc-like protein 2 (.1) Lus10042647 [exp] 58 / 2e-09 AT3G50330 163 / 1e-49 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003172 [exp] 55 / 3e-08 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024811 [exp] 55 / 3e-08 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042572 [exp] 52 / 6e-08 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.010G137600.2 pacid=42796946 polypeptide=Potri.010G137600.2.p locus=Potri.010G137600 ID=Potri.010G137600.2.v4.1 annot-version=v4.1 ATGAGAGGAAAAGGGAATCAAAATCAAGAGGAGGAAGAGTACGAGGAAGATGAATTTGGTTCCAGAAAAGATGGGCCATCTTCAAATTTTACAATAGACA ACACTAATTCTTGTAAAGATGGGAAGCATAGTGACAAGGCTAATGCAATAAGATCGAAACATTCTGTCACTGAGCAGAAAAGGAGGAGCAAGATAAACGA GAGATTTCAGATATTGAGAGATCTCATTCCTCATAGTGATCAAAAGAGAGATACAGCATCATTTTTATTAGAGGTAATTGAATATGTCCAGTATTTACAG GAGAAGGTGCAAAAGTATGAGGGTCCATATCCCGGATGGAGTCCTGAGCCAGCAAAGTTGATGCCATGGAGAAACAGCCACTGGCGCCTGCAAAGTTTTG TTGGTCACCCTCAAGCTACTAAAAATGGTTCTGGTCTAGGGGCAGCATTTCCAGGGAAACTTGATGAGAATAACATTACTCTCACCCCAGCCATGCTTCC AAGCACTCCAAATCTAATAGAATCTGACCATGTCACCTGCAAAGTGTTGGAGCATCAACCTGAGCTAGCAAATGCTCTTCCCATGCCTGCTCCTGCTCGA AGTGATGGACTTGTTGCACCTCCTCTTGAGCAACCAGTCTCTGATGCTCAATCAGCTGAGTGCCCCATCACCAGTGAAATGTTGAACCAGCAGGAGCTGG CAATTGAAGCAGGGACTATCAGTATCTCCAGTGTTTACTCTCAAGAGTTGCTGAATACCCTTACGCAAGCATTGCAGAGTGCCAGTGTAGATCTGTCACA GGCCAACATCTCAGTTCAGATTGATCTTGGAAAACGGGCAAATAAAGGGCTGGCCTCTGGAACATCAACATCTAAGGATCCCCAGGATTGCAATCAAGTG ATGACCCACCTTAGGGATACAAGTGAAGGAGAGGACTCGGATCAAGCTCAAAAACGGCTAAAGACATAA
AA sequence Show only first row Show all	>Potri.010G137600.2 pacid=42796946 polypeptide=Potri.010G137600.2.p locus=Potri.010G137600 ID=Potri.010G137600.2.v4.1 annot-version=v4.1 MRGKGNQNQEEEEYEEDEFGSRKDGPSSNFTIDNTNSCKDGKHSDKANAIRSKHSVTEQKRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQ EKVQKYEGPYPGWSPEPAKLMPWRNSHWRLQSFVGHPQATKNGSGLGAAFPGKLDENNITLTPAMLPSTPNLIESDHVTCKVLEHQPELANALPMPAPAR SDGLVAPPLEQPVSDAQSAECPITSEMLNQQELAIEAGTISISSVYSQELLNTLTQALQSASVDLSQANISVQIDLGKRANKGLASGTSTSKDPQDCNQV MTHLRDTSEGEDSDQAQKRLKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Potri.010G137600 [exp]	0	1
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Potri.008G076800 [exp]	3.46	0.6806
AT4G01220		MGP4	male gametophyte defective 4, ...		Potri.014G092400 [exp]	6.70	0.6221
AT1G48900			Signal recognition particle, S...		Potri.016G112800 [exp]	7.07	0.6441	SRP.3
AT5G50870		UBC27	ubiquitin-conjugating enzyme 2...		Potri.012G104100 [exp]	11.13	0.6285
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Potri.003G218700 [exp]	14.28	0.6384
AT1G20575		DPMS1	dolichol phosphate mannose syn...		Potri.002G010300 [exp]	22.27	0.6078
AT1G55880			Pyridoxal-5'-phosphate-depende...		Potri.001G367000 [exp]	27.16	0.6036
AT4G14965		ATMAPR4	membrane-associated progestero...		Potri.016G022700 [exp]	28.63	0.5499
AT3G29130			unknown protein		Potri.011G098200 [exp]	31.81	0.5936
AT4G27585			SPFH/Band 7/PHB domain-contain...		Potri.012G005500 [exp]	33.54	0.5693

Compare expression of checked genes

Potri.010G137600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.