Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69020 889 / 0 Prolyl oligopeptidase family protein (.1) AT5G66960 526 / 3e-176 Prolyl oligopeptidase family protein (.1) AT1G50380 329 / 2e-101 Prolyl oligopeptidase family protein (.1) AT1G76140 116 / 1e-26 Prolyl oligopeptidase family protein (.1.2) AT1G20380 108 / 5e-24 Prolyl oligopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G035900 [exp] 553 / 0 AT5G66960 1087 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.007G001300 [exp] 331 / 1e-101 AT1G50380 1149 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.005G247300 [exp] 146 / 6e-36 AT1G76140 1206 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.005G247400 [exp] 120 / 1e-27 AT1G76140 1210 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G014000 [exp] 116 / 1e-26 AT1G76140 1217 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G013900 [exp] 115 / 2e-26 AT1G76140 1165 / 0.0 Prolyl oligopeptidase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004631 [exp] 972 / 0 AT1G69020 830 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10026683 [exp] 929 / 0 AT1G69020 785 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10017568 [exp] 534 / 3e-179 AT5G66960 1124 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032378 [exp] 388 / 3e-122 AT1G69020 372 / 1e-116 Prolyl oligopeptidase family protein (.1) Lus10032920 [exp] 328 / 8e-101 AT1G50380 1018 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10015387 [exp] 320 / 7e-97 AT1G50380 1096 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10026659 [exp] 142 / 6e-39 AT1G69020 156 / 4e-45 Prolyl oligopeptidase family protein (.1) Lus10021235 [exp] 119 / 3e-27 AT1G76140 1184 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10034558 [exp] 111 / 4e-25 AT1G76140 565 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10019994 [exp] 111 / 6e-25 AT1G76140 1008 / 0.0 Prolyl oligopeptidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00326 [poplar] [flax] Peptidase_S9 Prolyl oligopeptidase family CL0186 [poplar] [flax] Beta_propeller PF02897 [poplar] [flax] Peptidase_S9_N Prolyl oligopeptidase, N-terminal beta-propeller domain
Representative CDS sequence Show only first row Show all	>Potri.010G137801.2 pacid=42797644 polypeptide=Potri.010G137801.2.p locus=Potri.010G137801 ID=Potri.010G137801.2.v4.1 annot-version=v4.1 ATGGCGCTTCTTTCTCTTCTAGTCTCAAAACCCTCACTCAAAACCTCCTTTCTCCCCCTCACTTCTCACTTAATTCCCATCATACCCTCTTCCCCTCTCT CTTCTCATTGCACCACCCCCACTTTCCCATTGCCTTCTCAATCCCCTCCTGTGCCAAAGAAACGACCTTTCAATATCTCTGCTCATACCAGAACGTGGCA AGATCCTTATCATTGGATGAGAAACGCTAAAGACCCTGACTTTGTTGATTATCTCAACCAAGAAAACTCTTACGCTCAAGCTTTCATGGCTGACACTCAA AACCTGCAGAGGACTTTGCTTGAGGAAATGAAAAATCGATTGCCTACTCAGATTTCAACTCCTCCTGAGCGCTGGGGTCACTGGTTGTACTACCAGTACA TTCCTGAGGGGAAGGAATACCCAGTTCTATGTAGAAGGTTGGAAACTGAGGAAAGTGGTTTGTTAAAGACACTTCTCAATTATGCCAAGGGACATTTTGG GATGGAGCAAGTTTTGCTTGACTGGAACCAAATTGCTGAACAATACGGTTATGTGCATGTGGGTACATGTCGGGTTTCACCAGATCACAAGTTTCTTGCA TACACACTTGACATTACTGGCAATGAACAATTCTTACTTCAAGTTAAGGACCTCAGCAATGGATATATTGTTTCACGATCACAAGTTGATGGGGTTGTTA GTTTGGCATGGGCTCAAGATAGCACTACTTTGTTCTACACAGTATCGGATGAGAATCAACGACCTTACAGGGTTCTCTTCACAAAACTAGGATCAGATGA GATAGATGATGTCCCAGTATTTACAGAAAGTAATTCAAGTTTTTGTGTGGATATAACAAGCACAAAAGATGGCAAGTTTATCACTGTGAACTCAAATTCA AGAACTTCATCCGAGGTTTATGTGATAGATGCAACCAACCCGCTGGATGGTTTACAAAGAGTACGCGAGCGTGTTTCTGGAGTGCGATATTTTTTGGAAC ATCACTATGGTGTGTTCTATATTCTTACAAATGCTCCTTTAAGTGAAAGTGAGGACCGGTTAGATGGAAATTATTATTTGGCTCAATGCCAAGTTGGAGA TATACAATCTTCTGATTGGCAGAATTTCATCCTTCCAAGTGAAGATATGAGCTTTCAAGACATGGACATTTTTAATGGACATTTGGTCCTCTTTGTCAAT AAGAAGAGCTTTCCTGCATTATGTTCCGTCAATTTGCCAATCAAGTTTAACAGTGTGAATCAGTTGGAGATTGAGAATCTTGATCCATGGTTTTTTCCCC TGCCCTCAAGTCAATGTAACATCGTTCCAGGATCAAACCATGACTTCATGAACCCAGTATACCGTGTGGTGCTGTCATCTCCAGTGATGCCTGGTGTGGT TGTTGACTATAACATGTCAGAACAGATATTTTCGATTGTGCAACAAGAGAAAGTAAGAGATATTCCTGGTGATTGTGGATCATGCTCACTGGCTTACGAG CTAGATACTTCTGAACATCTTGACCCACTAAACTATAAGGACAAAAATAACTTGAATATTGAATTGCAAAGATGGAAAGACTTTTCTGGTGCATATTGCT GCAAAACAAAGGAAGTCATTTCCCATGATGGTGTCAGGGTTCCTCTGACCATTTTGTACTCCCGAAAAGCCTGGCAGAGGGGTCAATCTCCTGGACTATT AGAGGGCTATGGAGCATATGGAGAAGTTCTAGATAAAAGCTGGTGCTCAGACCGCCTGAGTTTACTTGATCGTGGTTGGGTGCTGGCCTTTGCTGATGTG AGGGGTGGTGGCGGTCATTCTTTGTGGCATAAATACGGCAGTGGGTTGAACAAATGCAATTCAATATATGACTTCATATCATGCGGCAACTACCTAGTTT CTGAGGGCTATGTTCATAGAGATCAGCTAGGTGCCATTGGATTTAGTGCAGGGGGTCTTCTTGTTGGGGCAGCTATCAATATGAACCCAAATTTATTTCG TGCTGCCATTTTGAAGGTTCCATTTCTTGATGCATGCAACACGTTGCTGGATCCAAGTTTGCCTCTCACCTTGCTGGACTACGAAGAATTTGGGAATCCT CAGATACAGTCGCAGTTTGAATCAATTTTAAGTTATTCTCCTTATGATAACATTCCTCGTGATGCTTGCCTTCCATCAATGCTTGTAACTGCATCTTTTC ATGACTCAAGGGTTGGAGTTTGGGAAGCTGCCAAATGGGTGGCCAGAACACGAGACATTGCATGTTCTCATTGTTCTCGTTCAGTCATTCTGAAAACAAA TATGACTGGAGGGCATTTTGGTGAAGGCGGTTGCTATAGTCAATGTGAAGAAACAGCTTATGATTATGCTTTTCTGATGAAAACTATAGGAAATGTGAAT GGCAATAAATAA
AA sequence Show only first row Show all	>Potri.010G137801.2 pacid=42797644 polypeptide=Potri.010G137801.2.p locus=Potri.010G137801 ID=Potri.010G137801.2.v4.1 annot-version=v4.1 MALLSLLVSKPSLKTSFLPLTSHLIPIIPSSPLSSHCTTPTFPLPSQSPPVPKKRPFNISAHTRTWQDPYHWMRNAKDPDFVDYLNQENSYAQAFMADTQ NLQRTLLEEMKNRLPTQISTPPERWGHWLYYQYIPEGKEYPVLCRRLETEESGLLKTLLNYAKGHFGMEQVLLDWNQIAEQYGYVHVGTCRVSPDHKFLA YTLDITGNEQFLLQVKDLSNGYIVSRSQVDGVVSLAWAQDSTTLFYTVSDENQRPYRVLFTKLGSDEIDDVPVFTESNSSFCVDITSTKDGKFITVNSNS RTSSEVYVIDATNPLDGLQRVRERVSGVRYFLEHHYGVFYILTNAPLSESEDRLDGNYYLAQCQVGDIQSSDWQNFILPSEDMSFQDMDIFNGHLVLFVN KKSFPALCSVNLPIKFNSVNQLEIENLDPWFFPLPSSQCNIVPGSNHDFMNPVYRVVLSSPVMPGVVVDYNMSEQIFSIVQQEKVRDIPGDCGSCSLAYE LDTSEHLDPLNYKDKNNLNIELQRWKDFSGAYCCKTKEVISHDGVRVPLTILYSRKAWQRGQSPGLLEGYGAYGEVLDKSWCSDRLSLLDRGWVLAFADV RGGGGHSLWHKYGSGLNKCNSIYDFISCGNYLVSEGYVHRDQLGAIGFSAGGLLVGAAINMNPNLFRAAILKVPFLDACNTLLDPSLPLTLLDYEEFGNP QIQSQFESILSYSPYDNIPRDACLPSMLVTASFHDSRVGVWEAAKWVARTRDIACSHCSRSVILKTNMTGGHFGEGGCYSQCEETAYDYAFLMKTIGNVN GNK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69020			Prolyl oligopeptidase family p...		Potri.010G137801 [exp]	0	1
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Potri.001G346000 [exp]	2.23	0.8539
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Potri.001G359900 [exp]	2.44	0.8760
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Potri.016G116600 [exp]	6.00	0.8604
AT3G55080			SET domain-containing protein ...		Potri.008G047400 [exp]	6.78	0.8148
AT3G48470		EMB2423	embryo defective 2423 (.1)		Potri.015G090700 [exp]	6.92	0.8390
AT5G64320			Pentatricopeptide repeat (PPR)...		Potri.006G015900 [exp]	8.60	0.7990
AT5G55840			Pentatricopeptide repeat (PPR)...		Potri.001G368700 [exp]	8.83	0.8488
AT3G16610			pentatricopeptide (PPR) repeat...		Potri.003G006800 [exp]	11.61	0.8385
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Potri.010G183766 [exp]	16.58	0.8354
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Potri.015G003000 [exp]	16.94	0.8483

Compare expression of checked genes

Potri.010G137801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.