Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03830 43 / 6e-06 RGF8 root meristem growth factor 8, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036830 [exp] 50 / 4e-08 AT2G03830 40 / 6e-05 root meristem growth factor 8, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G138001.2 pacid=42799173 polypeptide=Potri.010G138001.2.p locus=Potri.010G138001 ID=Potri.010G138001.2.v4.1 annot-version=v4.1 ATGGACCTTATGGCCATCGTCACTGCTCTATGCATTTGTCTCTCTGTTCTTCTTGTTACACCTTCTGCTGCTATGCAAGTTCATGAGAAGCAATCATCAC ATCAACATGCCGCCGCCGATGATAGAATCAAGTTCTCTGACGTCCCTACACTGCCAAGGAAACTCAGAGTACTCCTTGATCAGGAAGCAGCTCAGGTTAA AAGCTATGCAGCTCGAAGCTCCACTTCGCTCAATAAGCAGAAGGGAGACAATGCTCCAGGCAAAGCATACCATAAGGAACAAAATGGGGTGCATGGAGGC AGACCAGCCGGGACATGGCGTGAATGGGTCGAGGGGACCGACACGTCCCATTTTTTTACGATGGATTATACGCAAGTTAGAAGACGACGTCCGATACATA ACAAATCCTTGCCGGTTGGTCCATAA
AA sequence Show only first row Show all	>Potri.010G138001.2 pacid=42799173 polypeptide=Potri.010G138001.2.p locus=Potri.010G138001 ID=Potri.010G138001.2.v4.1 annot-version=v4.1 MDLMAIVTALCICLSVLLVTPSAAMQVHEKQSSHQHAAADDRIKFSDVPTLPRKLRVLLDQEAAQVKSYAARSSTSLNKQKGDNAPGKAYHKEQNGVHGG RPAGTWREWVEGTDTSHFFTMDYTQVRRRRPIHNKSLPVGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03830		RGF8	root meristem growth factor 8,...		Potri.010G138001 [exp]	0	1
AT4G22810	AT-hook		Predicted AT-hook DNA-binding ...		Potri.003G116900 [exp]	2.23	0.9779
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.006G123400 [exp]	3.46	0.9744
AT3G09220		LAC7	laccase 7 (.1)		Potri.006G094100 [exp]	3.46	0.9723	LAC110a
AT4G14465	AT-hook	AHL20	AT-hook motif nuclear-localize...		Potri.008G164466 [exp]	4.89	0.9674
AT2G18210			unknown protein		Potri.007G022200 [exp]	5.91	0.9689
AT5G06490			RING/U-box superfamily protein...		Potri.010G243500 [exp]	6.00	0.9692
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Potri.010G211800 [exp]	8.94	0.9573
AT3G21880	CO	COL12	B-box type zinc finger protein...		Potri.007G121200 [exp]	8.94	0.9347	COL13.2
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Potri.014G070800 [exp]	9.16	0.9633
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Potri.010G061200 [exp]	9.94	0.9386

Compare expression of checked genes

Potri.010G138001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.