Plant FIBer expression Database

Potri.010G138100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G03810 92 / 6e-20 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
AT1G13650 49 / 3e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G111800
[exp]
660 / 0 AT2G03810 84 / 4e-17 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Potri.015G048400
[exp]
67 / 9e-12 AT2G03810 64 / 6e-11 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026682
[exp]
120 / 4e-29 AT2G03810 100 / 9e-23 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Lus10004632
[exp]
112 / 5e-27 AT2G03810 102 / 3e-24 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Lus10036829
[exp]
84 / 3e-17 AT2G03810 97 / 7e-22 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Lus10019193
[exp]
56 / 3e-08 AT2G03810 50 / 1e-06 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
PFAM info
Representative CDS sequence
>Potri.010G138100.8 pacid=42800133 polypeptide=Potri.010G138100.8.p locus=Potri.010G138100 ID=Potri.010G138100.8.v4.1 annot-version=v4.1
ATGAGACTTGATAGTGAACATGTGTTTTGCAATGGAACTATGGGCCATGAGCATGATTGTAGACCTGTCGAATATAATGATAATGTTCTGGACTCCATTG
GACTCAAGTCTGGAAATGTGACTGTGAAGGAGAATGAGAATGGGGAGTTGTATGATTTGAAGGGCATGGAAGGTGATGCAGATCGACTACCAAATGTAGC
ACCAGTACTCTCTCCTCATTCTTCATTGAAAATGGAGCCATTCGAGGATTCGGTTTTCTATATGGACAAAAGTGTTTTGGAACGTGAGGTGCCAGAGTTA
ATAGTCTGTTACAAAGAGAATACATGCCATGTCAAGGACATCTGCATTGATGAGGGAGTACCTTTGCTGGACAAGTTCTTGTTTGACACAGATGCACATG
AGAAGAATGTGTGTGAATTCTTACCTTCTGCAAGGGATATGAACAATGAGATGGTTAAAGAAAAGTCTGACCTTGATATGTTGATTCCAGATGTGCTGAA
ATCTTCACCAGAAAAGCAAAATGCGAATATTCATTTGCCTGTTCCGGATATGCTGAAATCTTCCGAAGAACAGGATTTGAAATGTGAATTATCCCTTGAT
TATAATCCCAAGCATTTAGTACCAACAGAGGAAGTTATGGACTATGTAACGGAGAAGGTTGCAAATGATGCACCCAAAGAGATTTTATCACTTAGAGATC
TGCTTTCAATGCCAGAATTTGGTGCAAATTTTACTTCTACCAAGTCCAATCACAGCATGGATAAAGTTGAACAACATTCTCTTCAGTGCCCGCGGGAAAA
TGCAATATTGGAGTCAGATTCTACAAGTGAAGAATCTGAAAATCGCAGTAAGGAAACAGTCTCAGTGACATCTACTTTGGTTTTTGCTGCTGAAGAACGT
GACAGTGGCCTTGAGGCACCAACCTTGGCAATCCCTGCCCAGGATCCTGCATATCAAGAAGCAGAGCATAGCCACAAGGAAGTGGTCTTGGTGAGTCCTA
CTCTGACTTCTGCAGCAGGAGAATCAGACAGCAGCATCGTGGAATCAAAACTGGCAATCCATGCTTTGGATTCTATTTATGAAGAATTGACCAGTAGGAT
CATGGATCAGTCACCTTACGATAGTAAGGCGGAGACTGGAAGCATCACTTTTGACAATGACTCTTCTGCTCCCGCTGCGAGTGGTGGACAGTCTCCTCGG
AATGGTGACTCTCAGTGTCTCGAGCCTCAAATTTCATCCAGGCTTGAAGATCCTAATACCGAGCCATTTTCAGGTCAACTTTGTACTGATGGAGAGTCAA
GTTTCTCCGCAACAGGCTCTTTACCAGGTCTGGTAAGTTACTCGGGGCCCATTCCGTATTCTGGGAGTGTCTCTCTTCGATCAGACAGCAGCACAACCAG
CACCCGCTCCTTTGCCTTCCCCGTATTACAGTCAGAATGGAATAGCAGTCCTGTAAGAATGGCGAAAGCTGACCGAAGACATTTCCAGAAACCTAGGAGT
TGGAGGCAGGGCCTTCTTTGCTGTAGATTCTGA
AA sequence
>Potri.010G138100.8 pacid=42800133 polypeptide=Potri.010G138100.8.p locus=Potri.010G138100 ID=Potri.010G138100.8.v4.1 annot-version=v4.1
MRLDSEHVFCNGTMGHEHDCRPVEYNDNVLDSIGLKSGNVTVKENENGELYDLKGMEGDADRLPNVAPVLSPHSSLKMEPFEDSVFYMDKSVLEREVPEL
IVCYKENTCHVKDICIDEGVPLLDKFLFDTDAHEKNVCEFLPSARDMNNEMVKEKSDLDMLIPDVLKSSPEKQNANIHLPVPDMLKSSEEQDLKCELSLD
YNPKHLVPTEEVMDYVTEKVANDAPKEILSLRDLLSMPEFGANFTSTKSNHSMDKVEQHSLQCPRENAILESDSTSEESENRSKETVSVTSTLVFAAEER
DSGLEAPTLAIPAQDPAYQEAEHSHKEVVLVSPTLTSAAGESDSSIVESKLAIHALDSIYEELTSRIMDQSPYDSKAETGSITFDNDSSAPAASGGQSPR
NGDSQCLEPQISSRLEDPNTEPFSGQLCTDGESSFSATGSLPGLVSYSGPIPYSGSVSLRSDSSTTSTRSFAFPVLQSEWNSSPVRMAKADRRHFQKPRS
WRQGLLCCRF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G03810 18S pre-ribosomal assembly pro... Potri.010G138100
[exp]
0 1
AT3G62210 EDA32 embryo sac development arrest ... Potri.013G003000
[exp]
5.47 0.7721
AT5G58003 CPL4 C-terminal domain phosphatase-... Potri.018G108300
[exp]
9.48 0.7957
AT3G44600 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 ... Potri.009G146400
[exp]
17.05 0.7984
Potri.003G012451
[exp]
23.49 0.7735
AT4G18530 Protein of unknown function (D... Potri.004G227700
[exp]
29.29 0.7583
AT4G29810 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinas... Potri.006G146500
[exp]
30.49 0.7587 Pt-MEK1.1
AT3G12670 EMB2742 embryo defective 2742, CTP syn... Potri.010G176500
[exp]
32.40 0.7422
AT1G19010 unknown protein Potri.001G350000
[exp]
33.31 0.7662
AT5G01960 RING/U-box superfamily protein... Potri.006G111800
[exp]
36.26 0.7726
AT3G53690 RING/U-box superfamily protein... Potri.018G064400
[exp]
40.42 0.7532

Potri.010G138100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.