Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45070 337 / 1e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45080 336 / 3e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03760 329 / 2e-112 AtSOT12, AtSOT1, ATST1, RAR047, ST ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) AT2G03770 318 / 5e-108 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G43690 309 / 1e-104 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G13420 306 / 3e-103 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT5G07010 304 / 5e-102 ATST2A ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) AT2G03750 303 / 5e-102 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G28170 293 / 4e-98 SOT7 sulphotransferase 7 (.1) AT5G07000 293 / 6e-98 ATST2B ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, sulfotransferase 2B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G138501 [exp] 638 / 0 AT3G45070 351 / 3e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G138450 [exp] 632 / 0 AT3G45070 350 / 1e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G193400 [exp] 329 / 2e-112 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193200 [exp] 329 / 3e-112 AT5G07010 384 / 1e-133 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193250 [exp] 328 / 8e-112 AT5G07010 395 / 9e-138 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193300 [exp] 323 / 8e-110 AT5G07010 378 / 4e-131 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193500 [exp] 307 / 1e-103 AT5G07010 446 / 1e-157 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G005100 [exp] 290 / 9e-97 AT5G07010 301 / 5e-101 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G189100 [exp] 289 / 1e-96 AT5G07010 295 / 1e-98 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008673 [exp] 323 / 2e-109 AT5G07010 429 / 3e-151 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10026147 [exp] 318 / 1e-107 AT5G07010 425 / 2e-149 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10017878 [exp] 258 / 5e-84 AT1G18590 289 / 3e-96 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10041611 [exp] 221 / 1e-69 AT3G45070 239 / 9e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003070 [exp] 206 / 3e-64 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031624 [exp] 201 / 4e-62 AT3G45070 209 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033720 [exp] 197 / 1e-60 AT1G74100 229 / 6e-73 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10033718 [exp] 192 / 1e-58 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10034079 [exp] 188 / 2e-57 AT3G45070 206 / 1e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018047 [exp] 188 / 4e-57 AT1G74100 208 / 7e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13469 [poplar] [flax] Sulfotransfer_3 Sulfotransferase family
Representative CDS sequence Show only first row Show all	>Potri.010G138400.1 pacid=42799636 polypeptide=Potri.010G138400.1.p locus=Potri.010G138400 ID=Potri.010G138400.1.v4.1 annot-version=v4.1 ATGCCAAATCCCGAGCAATCTCTTTCTCTTCCCGGATACTTGCAAGAAAACGAAACCTCCCAAGAATTTAGAGACTTGATAGTCTCCATACCCACTGAGA AAGGCTGGATTGCAAATCATCTCCATCAATACCAAGGTTTTTGGCACACAACTAGGCAACTTCAAGGGGTTCTAGCTTGCCAAAAACACCTTCAAGCCCA AGATGGCGATATCTTTCTTGTCACCACTCCTAAATCAGGCTCTACTTGGTTAAAGGCAGTGATGTTTGCCTTGGTGAATCGGGTTTCCTTTCCTGACACT AAACAACACCCTTTGCTCACTAACAACCCTCATGCTCTTTTGCCTTTCTTGGAGATGGAATACATTGGCAAAGAGAATCTTGACTTCACCAACTACACTT TTCCTAGGCTGTTTTCAACTCATCTCCCACTCTTGTCACTTCCCAGATCTGTGGAGGACTCTGAGTGCAAGCTAGTTTACTTGTGTAGGAATCCTAAGGA CATTTTCGTGTCCCTTTGGCACTTCACTAACAAGTTGAGACCCATTGATTGGGGTGCTAGTTCACTTGAAGAGACCTTTGATAAATTTTGTAGGGGAGTG AATTTGTACGGGCCATTTTGGGACCATGTTTTGGGTTATTGGAAGGAGAGCCTGGAAAGGCCTCATAGGGTATTTTTCTTGAAGTACGAGGAAATGAAAA ATGAGCCCAGGATTCAATTGAGGAGACTGTCTGAATTCTTGGGGTGTCCATTTTCCCTTGAAGAAGAGAATAGCGGTGTCTTGGATGAAATCTTGGAGCT GTGTAGTTTTGAAAACCTGAGCAATTTAGAAGTGAATAATATCGGAAGGCTGCATTCCGGAGAGGAGCATCAGGCCTTTTTTCGACGAGGCGAAGTTGGT GATTCCATGAATTATCTCACGGCTGAGATGGTGGAAAAAATTGACATGATCACTGAGCAGAAGTTGCATTGTCATGGTTTAAAGTTCTAG
AA sequence Show only first row Show all	>Potri.010G138400.1 pacid=42799636 polypeptide=Potri.010G138400.1.p locus=Potri.010G138400 ID=Potri.010G138400.1.v4.1 annot-version=v4.1 MPNPEQSLSLPGYLQENETSQEFRDLIVSIPTEKGWIANHLHQYQGFWHTTRQLQGVLACQKHLQAQDGDIFLVTTPKSGSTWLKAVMFALVNRVSFPDT KQHPLLTNNPHALLPFLEMEYIGKENLDFTNYTFPRLFSTHLPLLSLPRSVEDSECKLVYLCRNPKDIFVSLWHFTNKLRPIDWGASSLEETFDKFCRGV NLYGPFWDHVLGYWKESLERPHRVFFLKYEEMKNEPRIQLRRLSEFLGCPFSLEEENSGVLDEILELCSFENLSNLEVNNIGRLHSGEEHQAFFRRGEVG DSMNYLTAEMVEKIDMITEQKLHCHGLKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45070			P-loop containing nucleoside t...		Potri.010G138400 [exp]	0	1
AT4G37630		CYCD5;1	cyclin d5;1 (.1.2)		Potri.007G055300 [exp]	1.41	0.9059	CYCD5.1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.002G040700 [exp]	2.44	0.9015
AT3G43720			Bifunctional inhibitor/lipid-t...		Potri.009G158100 [exp]	3.46	0.8918
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Potri.001G041500 [exp]	5.47	0.8842
AT4G14940		ATAO1	amine oxidase 1 (.1)		Potri.010G088900 [exp]	6.92	0.8553
AT5G47920			unknown protein		Potri.003G160300 [exp]	7.07	0.8619
AT5G20950			Glycosyl hydrolase family prot...		Potri.019G037400 [exp]	7.34	0.8551
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G116900 [exp]	7.74	0.8956
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Potri.002G178000 [exp]	8.48	0.8703	Pt-KCS1.1
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.008G160000 [exp]	9.79	0.8801

Compare expression of checked genes

Potri.010G138400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.