Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45070 350 / 1e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45080 344 / 3e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03770 330 / 7e-113 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03760 320 / 4e-109 AtSOT12, AtSOT1, ATST1, RAR047, ST ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) AT5G43690 319 / 3e-108 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G07010 308 / 1e-103 ATST2A ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) AT1G13420 307 / 1e-103 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT2G03750 307 / 3e-103 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G07000 304 / 2e-102 ATST2B ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, sulfotransferase 2B (.1) AT1G28170 297 / 7e-100 SOT7 sulphotransferase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G138501 [exp] 646 / 0 AT3G45070 351 / 3e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G138400 [exp] 632 / 0 AT3G45070 337 / 1e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G193200 [exp] 333 / 5e-114 AT5G07010 384 / 1e-133 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193400 [exp] 331 / 4e-113 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193250 [exp] 330 / 7e-113 AT5G07010 395 / 9e-138 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193300 [exp] 325 / 1e-110 AT5G07010 378 / 4e-131 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193500 [exp] 313 / 9e-106 AT5G07010 446 / 1e-157 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G189100 [exp] 294 / 1e-98 AT5G07010 295 / 1e-98 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G005100 [exp] 293 / 3e-98 AT5G07010 301 / 5e-101 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008673 [exp] 332 / 2e-113 AT5G07010 429 / 3e-151 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10026147 [exp] 327 / 3e-111 AT5G07010 425 / 2e-149 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10017878 [exp] 262 / 8e-86 AT1G18590 289 / 3e-96 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10041611 [exp] 228 / 3e-72 AT3G45070 239 / 9e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003070 [exp] 211 / 3e-66 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033720 [exp] 209 / 4e-65 AT1G74100 229 / 6e-73 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10031624 [exp] 204 / 2e-63 AT3G45070 209 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033718 [exp] 203 / 4e-63 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10034079 [exp] 197 / 4e-61 AT3G45070 206 / 1e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018047 [exp] 198 / 6e-61 AT1G74100 208 / 7e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13469 [poplar] [flax] Sulfotransfer_3 Sulfotransferase family
Representative CDS sequence Show only first row Show all	>Potri.010G138450.1 pacid=42797861 polypeptide=Potri.010G138450.1.p locus=Potri.010G138450 ID=Potri.010G138450.1.v4.1 annot-version=v4.1 ATGACAAGCCCCGAGCAATCTCTTTCTCTTCCCATATTCTTGCAAGAAAATGAAACCTCCCAAGAATTCAAAGACTTGATAGCCTCGATGCCCACTGAGA AAGGCTGGATTACAAAACATCTCCATCAATACCAAGGTTTTTGGTACTCAACTAGGCAACTTCCAGGGATTCTAGCTTGCCAAAAACACTTTCAAGCCCA AGATGGCGATATCTTTCTTGTGAGCACTCCTAAATCAGGCTCTACTTGGTTAAAGGCGGTGATGTTTTCCTTGGTGAATCGGGTTTCCTTTCCTGACACT AAACAACACCCTTTGCTCACTAACAACCCTCATGCTCTTGTGCCTTTCTTGGAGATGGAATACATTGGCAAAGAGAATCTTGACTTCACCAACTACACTT TTCCTAGGCTGTTTTCAACTCATCTCCCACTCTCATCACTTCCGAGATCTGTGGAGGACTCTGATTGCAAGCTTGTTTACTTGTGTAGGAATCCTAAGGA CACTTTCGTGTCCTTTTGGCACTTCAGTAACAAGTTGACACCCATAGATTGGGTTGCTACTTCACTTGAAGAGACCTTTGATAAATTCTGTAGGGGAGCG AGTTTGTATGGGCCATTTTGGGACCATGTTTTGGGTTATTGGAAGGAGAGCCTGGAAAGGCCTCATAGGGTATTTTTCATGAAGTACGAGGAAATGAAAA ACGAGCCCAGGATTCAATTGAGGAGACTGTCTGAATTCTTGGGGTGTCCATTTTCCCTTGAAGAAGAGAATAGCGGTGTCTTGGATGAAATCTTGGATCT GTGTAGTTTTGAAAACCTGAGCAATTTAGAAGTGAACAAGATCGGAAGGCTGCATTCCGGACATGAGCATCAGGCCTTTTTTCGACGAGGCGAAGTTGGC GATTCCATGAATTATCTCACGGCTGAGATGGTGGAAAAAATTGACATGATCACTGAGCAGAAGTTGCATTGTCATGGTTTAAAGTTCTAG
AA sequence Show only first row Show all	>Potri.010G138450.1 pacid=42797861 polypeptide=Potri.010G138450.1.p locus=Potri.010G138450 ID=Potri.010G138450.1.v4.1 annot-version=v4.1 MTSPEQSLSLPIFLQENETSQEFKDLIASMPTEKGWITKHLHQYQGFWYSTRQLPGILACQKHFQAQDGDIFLVSTPKSGSTWLKAVMFSLVNRVSFPDT KQHPLLTNNPHALVPFLEMEYIGKENLDFTNYTFPRLFSTHLPLSSLPRSVEDSDCKLVYLCRNPKDTFVSFWHFSNKLTPIDWVATSLEETFDKFCRGA SLYGPFWDHVLGYWKESLERPHRVFFMKYEEMKNEPRIQLRRLSEFLGCPFSLEEENSGVLDEILDLCSFENLSNLEVNKIGRLHSGHEHQAFFRRGEVG DSMNYLTAEMVEKIDMITEQKLHCHGLKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45070			P-loop containing nucleoside t...		Potri.010G138450 [exp]	0	1
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Potri.002G109601 [exp]	1.73	0.9674
AT3G45070			P-loop containing nucleoside t...		Potri.010G138501 [exp]	3.16	0.9597
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G193200 [exp]	3.46	0.9563
AT4G35160			O-methyltransferase family pro...		Potri.009G139800 [exp]	4.89	0.9438
AT4G01575			serine protease inhibitor, Kaz...		Potri.014G108800 [exp]	6.78	0.9162
AT5G48100		LAC15, TT10, AT...	TRANSPARENT TESTA 10, LACCASE-...		Potri.005G200700 [exp]	7.48	0.9314
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Potri.004G088700 [exp]	7.61	0.9085
AT5G51790	bHLH	bHLH120	basic helix-loop-helix (bHLH) ...		Potri.012G132000 [exp]	9.21	0.9499
AT2G47260	WRKY	ATWRKY23, WRKY2...	WRKY DNA-binding protein 23 (....		Potri.002G193000 [exp]	9.48	0.9369	Pt-WRKY48.2
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.016G023340 [exp]	10.48	0.9183

Compare expression of checked genes

Potri.010G138450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.