Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69040 743 / 0 ACR4 ACT domain repeat 4 (.1.2) AT2G03730 642 / 0 ACR5 ACT domain repeat 5 (.1.2) AT3G01990 523 / 0 ACR6 ACT domain repeat 6 (.1) AT1G76990 462 / 3e-161 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT1G12420 431 / 5e-149 ACR8 ACT domain repeat 8 (.1) AT4G22780 407 / 2e-139 ACR7 ACT domain repeat 7 (.1) AT5G25320 387 / 7e-131 ACT-like superfamily protein (.1) AT5G65890 345 / 1e-114 ACR1 ACT domain repeat 1 (.1.2) AT1G16880 50 / 1e-06 ACR11 ACT domain repeats 11, uridylyltransferase-related (.1.2) AT2G36840 50 / 1e-06 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G109200 [exp] 876 / 0 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2) Potri.T124144 [exp] 870 / 0 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2) Potri.001G327000 [exp] 577 / 0 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.001G060100 [exp] 518 / 0 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2) Potri.012G083000 [exp] 506 / 2e-178 AT1G69040 493 / 3e-173 ACT domain repeat 4 (.1.2) Potri.003G167800 [exp] 501 / 2e-176 AT1G69040 486 / 1e-170 ACT domain repeat 4 (.1.2) Potri.015G100300 [exp] 501 / 2e-176 AT1G69040 483 / 3e-169 ACT domain repeat 4 (.1.2) Potri.003G116600 [exp] 489 / 6e-172 AT1G12420 624 / 0.0 ACT domain repeat 8 (.1) Potri.001G115600 [exp] 485 / 3e-170 AT1G12420 627 / 0.0 ACT domain repeat 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036827 [exp] 759 / 0 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10012550 [exp] 564 / 0 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10041543 [exp] 555 / 0 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10003136 [exp] 516 / 0 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 513 / 0 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10019191 [exp] 472 / 2e-167 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2) Lus10028646 [exp] 471 / 2e-164 AT1G76990 699 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10018943 [exp] 471 / 3e-161 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10011715 [exp] 388 / 2e-131 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2) Lus10006662 [exp] 281 / 5e-91 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [poplar] [flax] ACT PF01842 [poplar] [flax] ACT ACT domain CL0070 [poplar] [flax] ACT PF13740 [poplar] [flax] ACT_6 ACT domain
Representative CDS sequence Show only first row Show all	>Potri.010G138600.4 pacid=42799819 polypeptide=Potri.010G138600.4.p locus=Potri.010G138600 ID=Potri.010G138600.4.v4.1 annot-version=v4.1 ATGGAGGTCAACATGAGCTTTTCAAATGACATGGATGATGAATATGAGAAACTCTTTAGGAGATTGAATCCACCCAGGGTTGTGATTGATAATGAAGCTT GCAAGAATGCTACTGTCATAAGGGTTGATAGTGCTAACAAACATGGAATACTTCTTGAAGTTGTACAAGTCCTTACTGATCTGAACCTTATCATAACCAA AGCTTACATATCTTCTGATGGTGGTTGGTTTATGGATGTTTTTAATGTTACGGATCCTGATGGAAATAAGGTTACTGATGAAGCAATTCTAGATTATATT ACAAAGTCTCTAGGGCCAGAATCCTGCTTTACATCTTCTATGAGATCTGTTGGGGTTAAACAATCCATGGACCACACTGCAATTGAGTTAACAGGAAGTG ACAGACCAGGGCTGCTATCTGAAGTGAGTGCTGTGCTCACCCACCTAAAATGCAACGTAGTGAATGCAGAGGTCTGGACACACAATATGCGGGCCGCAGC CGTGATGCAAGTAACTGATGAGGAAACTGGGTCGGCAATTATTGATCCAGAGAAGCTATCTAGGATCAAGGAACTTCTTTGTAATGTACTGAAGGGCAGT AACAAATCTAGGGGAGCTAAAACTGTTGTCTCTCATGGGGTCACCCATACCGAGAGAAGGCTTCACCAAATGATGTTCGCTGATAGGGATTATGAACGAG CTAACAATGATGAATTAGATGAGAAGCAAAGGCCTAATGTGAGCGTGGTTAATTGGTGCGAGAAGGACTACTCAGTTGTAACTATAACAAGTAAAGATAG GCCAAAGCTTCTCTTTGATACAGTTTGTACATTGACAGACATGGAGTATGTGGTTTTTCATGCTAATATTGATGCTGAGGGCCCAGAAGCTCATCAGGAA TATTATATCAAGCATATTGATGGGTCCCCTGTAAAATCAGAGGCTGAGAGACAAAGGATTATACAATGTCTTGAAGCAGCTATTGAAAGAAGAGTATCCG AGGGCTTGAAGCTAGAGTTATGCACTACGGACAGAGTGGGGCTTCTATCCGATGTTACTCGTATCTTTCGAGAAAATAGCCTTACTGTCACCAGAGCAGA AGTAACAACCAGAGCAGGCAAAGCAGTTAATACATTTTATGTTAGTGATGCATCAGGGTATCCTGTTGATGCTAAGACCATAGATTCCATCCGGCAAGCA ATTGGCCAGACCATACTGAAGGTGAAAAGCAGTCCTGAAGAGCAAAAACCGGTGTCTCAGGAATCACCCACTAGGTTTCTCTTCGGAGGTCTCTTCAAAT CCAGATCTTTTGTCAACTTTGGATTGGTTAGATCCTATTCTTGA
AA sequence Show only first row Show all	>Potri.010G138600.4 pacid=42799819 polypeptide=Potri.010G138600.4.p locus=Potri.010G138600 ID=Potri.010G138600.4.v4.1 annot-version=v4.1 MEVNMSFSNDMDDEYEKLFRRLNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQVLTDLNLIITKAYISSDGGWFMDVFNVTDPDGNKVTDEAILDYI TKSLGPESCFTSSMRSVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVNAEVWTHNMRAAAVMQVTDEETGSAIIDPEKLSRIKELLCNVLKGS NKSRGAKTVVSHGVTHTERRLHQMMFADRDYERANNDELDEKQRPNVSVVNWCEKDYSVVTITSKDRPKLLFDTVCTLTDMEYVVFHANIDAEGPEAHQE YYIKHIDGSPVKSEAERQRIIQCLEAAIERRVSEGLKLELCTTDRVGLLSDVTRIFRENSLTVTRAEVTTRAGKAVNTFYVSDASGYPVDAKTIDSIRQA IGQTILKVKSSPEEQKPVSQESPTRFLFGGLFKSRSFVNFGLVRSYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.010G138600 [exp]	0	1
AT3G55960			Haloacid dehalogenase-like hyd...		Potri.008G068800 [exp]	6.63	0.7485
AT2G23450			Protein kinase superfamily pro...		Potri.007G034500 [exp]	28.56	0.7367
					Potri.018G018700 [exp]	33.76	0.6858
AT1G75388		CPuORF5	conserved peptide upstream ope...		Potri.005G119400 [exp]	48.49	0.7065
AT1G01380	MYB	ETC1	ENHANCER OF TRY AND CPC 1, Hom...		Potri.004G021300 [exp]	49.08	0.6656
AT3G21690			MATE efflux family protein (.1...		Potri.011G002900 [exp]	57.82	0.6530
AT4G03500			Ankyrin repeat family protein ...		Potri.019G105900 [exp]	59.46	0.6861
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Potri.004G161500 [exp]	59.86	0.6883
AT2G45910			U-box domain-containing protei...		Potri.001G239100 [exp]	60.00	0.6736
AT5G57035			U-box domain-containing protei...		Potri.006G147000 [exp]	60.20	0.6723

Compare expression of checked genes

Potri.010G138600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.