Plant FIBer expression Database

Potri.010G138700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G109150
[exp]
72 / 6e-18 AT1G69050 49 / 2e-09 unknown protein
Potri.T139662
[exp]
72 / 6e-18 AT1G69050 49 / 2e-09 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019190
[exp]
50 / 7e-09 ND 35 / 0.002
Lus10036826
[exp]
45 / 4e-07 ND /
PFAM info
Representative CDS sequence
>Potri.010G138700.1 pacid=42799393 polypeptide=Potri.010G138700.1.p locus=Potri.010G138700 ID=Potri.010G138700.1.v4.1 annot-version=v4.1
ATGGAGGATCACGGTGAGGAGTTTCCTGGATTCCAAACCTGTGTTCACAAAGAAGAGCTGGAATACAGGAGGCCATTAAGCAGGCTACAAAGGAGAGCTC
CTTGTCAACTGCAGATTAAGGTTAATAATAAAGCTCCTCTTGAATGCAAGAGTGCTCCTAAAATTTCTTCAGCATCAGCAGCGACTTCTTCATTCAATTC
CTTCTACCACAGTAAAGACCCTATTCCTCTTCTTTCTCCTCTTGTCTTGCCCTCCTTGCTCGAGTCTTCCTACATTCAACAAGGAAATCCTCCAAAACCT
CGTTGA
AA sequence
>Potri.010G138700.1 pacid=42799393 polypeptide=Potri.010G138700.1.p locus=Potri.010G138700 ID=Potri.010G138700.1.v4.1 annot-version=v4.1
MEDHGEEFPGFQTCVHKEELEYRRPLSRLQRRAPCQLQIKVNNKAPLECKSAPKISSASAATSSFNSFYHSKDPIPLLSPLVLPSLLESSYIQQGNPPKP
R

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G69050 unknown protein Potri.010G138700
[exp]
0 1
AT3G22600 Bifunctional inhibitor/lipid-t... Potri.008G155100
[exp]
1.00 0.8203
AT5G44210 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf dom... Potri.017G013700
[exp]
5.91 0.7142 ERF46
AT1G29750 RKF1 receptor-like kinase in flower... Potri.004G063500
[exp]
7.54 0.7487 RKF1.1
AT1G66180 Eukaryotic aspartyl protease f... Potri.004G085000
[exp]
8.00 0.7412
Potri.002G070101
[exp]
10.00 0.7262
AT5G51920 Pyridoxal phosphate (PLP)-depe... Potri.015G137900
[exp]
10.95 0.6723
AT1G32928 unknown protein Potri.011G151600
[exp]
13.63 0.7182
AT5G10830 S-adenosyl-L-methionine-depend... Potri.005G066200
[exp]
13.85 0.7101
AT1G05010 ACO4, EAT1, EFE ethylene forming enzyme, ethyl... Potri.011G020900
[exp]
15.09 0.6977 ACO7,Pt-ACO1.3
AT5G60800 Heavy metal transport/detoxifi... Potri.004G214700
[exp]
15.19 0.6706

Potri.010G138700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.