Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34630 552 / 0 GPPS, GPS1 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) AT1G17050 209 / 3e-63 SPS2 solanesyl diphosphate synthase 2 (.1) AT1G78510 207 / 2e-62 SPS1 solanesyl diphosphate synthase 1 (.1.2) AT2G18620 72 / 1e-13 Terpenoid synthases superfamily protein (.1) AT4G36810 71 / 4e-13 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT2G23800 64 / 5e-11 GGPS5, GGPS2 GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5, geranylgeranyl pyrophosphate synthase 2 (.1) AT3G14510 63 / 7e-11 Polyprenyl synthetase family protein (.1) AT2G18640 63 / 1e-10 GGPS4 geranylgeranyl pyrophosphate synthase 4 (.1) AT3G20160 62 / 2e-10 Terpenoid synthases superfamily protein (.1) AT1G49530 59 / 1e-09 GGPS6 geranylgeranyl pyrophosphate synthase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G135300 [exp] 724 / 0 AT2G34630 592 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) Potri.001G380500 [exp] 223 / 2e-68 AT1G78510 597 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Potri.011G099500 [exp] 167 / 3e-47 AT1G78510 415 / 8e-144 solanesyl diphosphate synthase 1 (.1.2) Potri.011G101301 [exp] 167 / 3e-47 AT1G17050 427 / 2e-148 solanesyl diphosphate synthase 2 (.1) Potri.011G101200 [exp] 149 / 4e-41 AT1G17050 397 / 2e-137 solanesyl diphosphate synthase 2 (.1) Potri.005G127100 [exp] 81 / 9e-17 AT4G36810 444 / 2e-156 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.007G031100 [exp] 81 / 2e-16 AT4G36810 467 / 1e-165 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124700 [exp] 78 / 2e-15 AT4G36810 413 / 1e-144 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.004G090600 [exp] 74 / 3e-14 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023287 [exp] 528 / 0 AT2G34630 541 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) Lus10005570 [exp] 218 / 8e-67 AT1G78510 564 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Lus10013703 [exp] 219 / 2e-64 AT1G78510 542 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Lus10042491 [exp] 210 / 3e-63 AT1G17050 548 / 0.0 solanesyl diphosphate synthase 2 (.1) Lus10022499 [exp] 79 / 1e-15 AT4G36810 491 / 8e-175 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028509 [exp] 75 / 1e-14 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10016803 [exp] 75 / 2e-14 AT4G36810 488 / 2e-173 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10033582 [exp] 64 / 1e-11 AT4G36810 305 / 6e-104 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028508 [exp] 64 / 5e-11 AT4G36810 380 / 9e-132 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028507 [exp] 63 / 2e-10 AT4G36810 375 / 2e-129 geranylgeranyl pyrophosphate synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [poplar] [flax] Terp_synthase PF00348 [poplar] [flax] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Potri.010G138800.1 pacid=42798572 polypeptide=Potri.010G138800.1.p locus=Potri.010G138800 ID=Potri.010G138800.1.v4.1 annot-version=v4.1 ATGTCATTGTCTCGAATTTCGAGGATCACCAGAAATGGCAGCCGTTGGTTTCTCTCTCATCAACCCTCATCGTATGGATTCTTGCTCTCCAACAATTCTC ACTCTTCTACTCCAAAGGTTTTTAGTTGCAGAGAAACTTATTCATGGACTGTACCTTCCTTGCATGTTTTCAAACATCAAATTCATCACCAGAGCAGTTC CTTAGTGGAGGAACAACTTGACCCGTTTTCACTTGTTGCTGATGAGCTATCAGTTCTTGCTAATAGATTGCGGTCAATGGTAATTGCTGAGGTACCTAAG CTTGCCTCAGCCGCTGAGTACTTTTTCAAAATGGGAGTAGAAGGAAAGAGGTTCCGTCCCACGGTTTTGTTGCTGATGGCAACAGCTTTGAATGTGCGTA TACTCGAAACAACAACTAGTGGTGTAGAAACAACAACTAGGGGTGTAGGAGATGCTTTGACAACAGAACTACGAAAAAGACAGCAATCTGTAGCTGAAAT TACCGAGATGATCCATGTGGCGAGTCTTCTGCATGATGATGTGTTGGATGATGCAGATACGAGACGTGGTATTGGTTCGTTAAATTTTGTTATGGGCAAT AAGGTGGCAGTACTAGCTGGAGATTTTCTACTTTCACGAGCTTGTGTAGCCCTTGCTTCTTTGAAAAACACAGAAGTTGTTACATTACTAGCGACAGTTG TAGAGCATCTTGTTACTGGTGAAACTATGCAGATGACTTCAACATCTGAGCAACGTTGTAGCATGGAGTATTATATGCAAAAGACGTACTACAAGACGGC ATCTTTGATTTCAAATAGCTGCAAGGCAATTGCCCTTCTTGCAGGGCAAACAACAGAAGTTGCAATGTTGGCTTTTGAGTACGGCAAAAATCTGGGATTG GCATATCAATTGATTGATGATGTTCTCGATTTCACAGGCACTTCTGCTTCCCTTGGAAAGGGTTCATTATCTGACATTCGCCATGGAATTGTAACAGCTC CAATATTATTTGCTATGGATGAGTTCCCTCAGTTGCGTTCAGTTATTGACTGGGGCTTTGACAAGCCTGAAAACATTGATGTAGCCCTTGAGTACCTTGG GAAGAGCCGTGGAATACAGAGAACAAGGGAGCTAGCTGCAAAGCATGCGAACCTGGCTGCAGCAGCAATTGATTCTTTACCTGAAACTGATGATGAAGAA GTAAGAAAATCACGGAGGGCACTAGTTGATCTTACTCAAAGAGTAATCACAAGAAATAAATGA
AA sequence Show only first row Show all	>Potri.010G138800.1 pacid=42798572 polypeptide=Potri.010G138800.1.p locus=Potri.010G138800 ID=Potri.010G138800.1.v4.1 annot-version=v4.1 MSLSRISRITRNGSRWFLSHQPSSYGFLLSNNSHSSTPKVFSCRETYSWTVPSLHVFKHQIHHQSSSLVEEQLDPFSLVADELSVLANRLRSMVIAEVPK LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRILETTTSGVETTTRGVGDALTTELRKRQQSVAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGN KVAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTSTSEQRCSMEYYMQKTYYKTASLISNSCKAIALLAGQTTEVAMLAFEYGKNLGL AYQLIDDVLDFTGTSASLGKGSLSDIRHGIVTAPILFAMDEFPQLRSVIDWGFDKPENIDVALEYLGKSRGIQRTRELAAKHANLAAAAIDSLPETDDEE VRKSRRALVDLTQRVITRNK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34630		GPPS, GPS1	GERANYLPYROPHOSPHATE SYNTHASE,...		Potri.010G138800 [exp]	0	1
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.006G023101 [exp]	3.16	0.8262
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.006G022300 [exp]	12.00	0.7894
					Potri.005G099266 [exp]	18.33	0.7816
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Potri.018G033400 [exp]	19.77	0.7799	2OGox9
AT3G47570			Leucine-rich repeat protein ki...		Potri.015G037400 [exp]	26.32	0.8042
AT1G22430			GroES-like zinc-binding dehydr...		Potri.018G142700 [exp]	29.69	0.8210	HNL.4
AT4G23290		CRK21	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111751 [exp]	36.94	0.8067
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Potri.008G162150 [exp]	39.62	0.7969
AT1G04340			HR-like lesion-inducing protei...		Potri.008G165100 [exp]	46.08	0.6937
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.014G104200 [exp]	46.86	0.7797	CIPK9.2

Compare expression of checked genes

Potri.010G138800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.