Plant FIBer expression Database

Potri.010G138900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73430 1316 / 0 sec34-like family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015940
[exp]
1375 / 0 AT1G73430 1319 / 0.0 sec34-like family protein (.1.2)
Lus10001792
[exp]
748 / 0 AT1G73430 720 / 0.0 sec34-like family protein (.1.2)
Lus10001793
[exp]
554 / 0 AT1G73430 533 / 0.0 sec34-like family protein (.1.2)
Lus10000075
[exp]
147 / 2e-41 AT1G73430 117 / 4e-32 sec34-like family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04136 Sec34 Sec34-like family
Representative CDS sequence
>Potri.010G138900.1 pacid=42798142 polypeptide=Potri.010G138900.1.p locus=Potri.010G138900 ID=Potri.010G138900.1.v4.1 annot-version=v4.1
ATGGCAAACAGAGCGAGTCCTCCAAATCTCCACAAATCAGTTGCCATCTCTAAAGGATACAACTTCGCTTCTACTTGGGAACAGAATGCGCCTTTAACTG
AGCAACAGCACGAAGCAATTGTGTCGCTCTCTCATGCAGTTTCCGAGCGACCCTACCCTAACAATTTGGCGCAAGATCATGCCTCTGTGAAGGAGAATGG
TGGCTTGACAGTTTCTACAAGGGACAGCAGTTTTGGTGAATCTCAAGGCATTGATGCAGTTTTAGTCAATACAAACCAGTTTTATAAATGGTTTACTGAT
CTTGAATCGGCAATGAAATCAGAGGCGGAGGAGAAGTACCAGCACTATGTCAACAATCTAACGGAGCACATGGAGACATGTGATGATATACTTCTCCAGG
TGGATGAAACTCTCGACTTCTTTAATGAGTTACAGCTGCAGCACCAAGCTGTTGCTACAAAGACTAAGACTCTTCATGATGCTTGTGACAGACTGGTAGT
AGAGAAGCAAAGACTGATTGAATTTGCAGAAGCAGTTCACAGTAAGCTCCACTACTTTGATGAATTGGAGAATCTTAATAACAATTTTTATGCTTCAAAT
ACGAATGTTGGAAATGAGAAATTTCTTCCACTGCTCAAAAGGCTTGATGAGTGCATATCATATGTCGAAAGCAATCCACAATACGCAGAATCCAGTGTTT
ATCTGCTTAAATTTCGACAGCTCCAGTCTCGAGCCCTGGGCATGATTCGAACTCATGTGCTTTCTGTCCTGAAAAATGCTTCATCTCAGGTTCAGCATGC
AATCCGGAGCACTGGAGGCAGCAAAACATCTATTTCCGAGGGTGTAGAGGCATCTGTAATCTATGTCAGATTCAAAGCAGCCTCAACTGAGCTTAAGCCC
ATATTGGAGGAGATCGAAAGCAGATCATCAAGAAAGGAATATGCCCAGATCCTTGCTGATTGCCACAAGTTGTACTGTGAACAGCGGCTTTCCTTGGTAA
AAGGGATTGTACATCAGAGGATATCTGAATTTGCCAAGAAAGAGGCTTTGCCATCATTAACTAGATCTGGTTGTGCATATTTGATGCTGGTTTGTCAACT
TGAGCACCAACTCTTTGATCATTTCTTCCCATCTTCTTCCGAGGATATTTCTAGTTTGGCTCCACTTATTGATCCTTTATCTACTTACTTGTATGATACA
CTGCGCCCAAAACTTATTCACGAAACAAATGTCGATCTTCTATGTGAACTTGTTGATATACTTAAAGTTGAAGTTTTGGGAGAACAACTTAGCAGACGGA
GCGAGTCATTAGCTGGGCTACGACCTACATTGCAGCGAATTTTAGCAGATGTTCATGAGCGATTGACTTTCCGTGCTCGGACATATATTCGTGATGAAAT
AGCCAATTATATACCTTCTAATGAGGACATGGATTACCCTGCAAAGTTGGAGCAATCTACTGAGATGAAATCAGAAACTAATTCTGTTGATGAAAACCCA
GATGTATTTAAAACTTGGTACCCACCTGTGGAGAGAACTCTATCATGCCTTTCAAAGTTATATCGTTGTCTAGAACCATCTGTCTTCACTGGTTTAGCAC
AGGAAGCGGTGGAAGTTTGCTCTGATTCTGTCCAGAAAGCTAGCAAACTCATTACAAAGAGATCTACAGCAATGGATGGGCAGCTATTTCTTATCAAGCA
TATTTTAATCTTAAGGGAGCAGATTGCACCATTTGATATAGAATTTTCAGTCACATACAAGGAACTCGACTTCTCTCATCTGCTGGAACACTTGAGACGG
ATACTTAGAGGTCAGGCCTCGCTATTTGATTGGTCAAGATCAACTTCGCTGGCAAGGACCTTGTCTCCCCGAGTTTTAGAAAGTCAAGTAGATGCAAAGA
AGGACCTGGAGAAAAGCCTAAAAGCTACTTGTGAGGAATTCATCATGTCAGTCACCAAGCTGGTTGTGGACCCCATGCTTTCCTTTGTTACCAAGGTGAC
AGCTGTGAAACTTGCTCTGTCCTCTGGTAGTCAGAATCAGAAAGTGGACTCTGTTATGGCCAAACCACTTAAAGATCAAGCCTTTGCTACTCCAGATAAG
GTGGCTGAACTTGTTCAGAAGGTAAATGCTGCAATTCAGCAAGAACTTCCGGTGGTGATGACAAAGATGAAGCTTTATCTGCAGAACCCATCTACACGAA
CAATTCTATTCAAACCAATAAAGACAAATATTGTGGAGGCGCATGTTCAAATACAATCCCTAGTAAAAGCTGAGTATTCACCTGAAGAACAGAGCATCAT
CAATATGACATCCATACAGAACCTGCAAGCAGAACTTGACAATCTCCTCTAA
AA sequence
>Potri.010G138900.1 pacid=42798142 polypeptide=Potri.010G138900.1.p locus=Potri.010G138900 ID=Potri.010G138900.1.v4.1 annot-version=v4.1
MANRASPPNLHKSVAISKGYNFASTWEQNAPLTEQQHEAIVSLSHAVSERPYPNNLAQDHASVKENGGLTVSTRDSSFGESQGIDAVLVNTNQFYKWFTD
LESAMKSEAEEKYQHYVNNLTEHMETCDDILLQVDETLDFFNELQLQHQAVATKTKTLHDACDRLVVEKQRLIEFAEAVHSKLHYFDELENLNNNFYASN
TNVGNEKFLPLLKRLDECISYVESNPQYAESSVYLLKFRQLQSRALGMIRTHVLSVLKNASSQVQHAIRSTGGSKTSISEGVEASVIYVRFKAASTELKP
ILEEIESRSSRKEYAQILADCHKLYCEQRLSLVKGIVHQRISEFAKKEALPSLTRSGCAYLMLVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTYLYDT
LRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLQRILADVHERLTFRARTYIRDEIANYIPSNEDMDYPAKLEQSTEMKSETNSVDENP
DVFKTWYPPVERTLSCLSKLYRCLEPSVFTGLAQEAVEVCSDSVQKASKLITKRSTAMDGQLFLIKHILILREQIAPFDIEFSVTYKELDFSHLLEHLRR
ILRGQASLFDWSRSTSLARTLSPRVLESQVDAKKDLEKSLKATCEEFIMSVTKLVVDPMLSFVTKVTAVKLALSSGSQNQKVDSVMAKPLKDQAFATPDK
VAELVQKVNAAIQQELPVVMTKMKLYLQNPSTRTILFKPIKTNIVEAHVQIQSLVKAEYSPEEQSIINMTSIQNLQAELDNLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G73430 sec34-like family protein (.1.... Potri.010G138900
[exp]
0 1
AT2G28250 NCRK Protein kinase superfamily pro... Potri.009G010400
[exp]
6.92 0.9047
AT1G31780 unknown protein Potri.004G236600
[exp]
7.34 0.9017
AT3G61130 GAUT1, LGT1 galacturonosyltransferase 1 (.... Potri.002G151400
[exp]
7.61 0.9199
AT3G61650 TUBG1 gamma-tubulin (.1) Potri.014G094900
[exp]
8.00 0.8644 Pt-TUBG1.1,TUBG1
AT4G30160 ATVLN4, VLN4 villin 4 (.1.2) Potri.006G165300
[exp]
8.36 0.9003
AT2G40730 CTEXP cytoplasmic tRNA export protei... Potri.013G090500
[exp]
9.27 0.9080
AT1G52360 Coatomer, beta' subunit (.1.2) Potri.003G056300
[exp]
12.00 0.9064
AT3G09410 Pectinacetylesterase family pr... Potri.006G084900
[exp]
13.41 0.8828
AT1G68100 IAR1 IAA-ALANINE RESISTANT 1, ZIP m... Potri.008G139900
[exp]
14.96 0.8509
AT4G32120 Galactosyltransferase family p... Potri.018G024500
[exp]
19.41 0.8884

Potri.010G138900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.