Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26710 372 / 1e-123 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14640 344 / 7e-113 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14620 336 / 8e-110 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT3G14610 334 / 4e-109 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14630 334 / 4e-109 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT2G46960 332 / 4e-108 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT1G75130 330 / 1e-107 CYP721A1 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) AT3G14680 330 / 2e-107 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14660 328 / 5e-107 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14690 321 / 4e-104 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G139200 [exp] 684 / 0 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139400 [exp] 683 / 0 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G071200 [exp] 649 / 0 AT2G26710 346 / 9e-114 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 640 / 0 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139600 [exp] 634 / 0 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139500 [exp] 519 / 0 AT3G14620 283 / 4e-90 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.018G070900 [exp] 390 / 8e-131 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.006G154500 [exp] 383 / 5e-128 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.011G101401 [exp] 372 / 1e-123 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036822 [exp] 658 / 0 AT2G26710 410 / 4e-137 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10004633 [exp] 625 / 0 AT2G26710 378 / 4e-126 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036820 [exp] 590 / 0 AT2G26710 397 / 2e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019184 [exp] 546 / 0 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) Lus10036942 [exp] 541 / 0 AT2G26710 375 / 2e-119 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10026085 [exp] 534 / 0 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10026681 [exp] 524 / 0 AT3G14620 322 / 4e-103 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Lus10017775 [exp] 524 / 0 AT3G14630 359 / 2e-117 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10026084 [exp] 514 / 2e-179 AT2G26710 375 / 6e-125 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036818 [exp] 512 / 1e-178 AT2G26710 369 / 2e-122 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.010G139300.1 pacid=42798126 polypeptide=Potri.010G139300.1.p locus=Potri.010G139300 ID=Potri.010G139300.1.v4.1 annot-version=v4.1 ATGGAAGCCCTGATAATTTTCATTCTAAGTTGCCTGTGTGTGCTTTTCATTCTACATCTCATAAAGTTCTTCATCAAAGTATGGTGGGATCCAATTCGAA TACAATCTGCGATGAGGTCACAAGGCATGAAAGGTCCTCCTTACAGGTTCCTACATGGAAACACCAAAGAGATTTACAATATGAGAAATGAAATCATGAG CAGTCCAATGGAACTATCACACCAGATGCTTGCTAGAATTCAACCTCATGTTTATTCATGGATCAAGCTATATGGGATGAACTTTCTTAATTGGTATGGT CCCCAAGCTCAATTAGTAATCACTGAACCTAAGCTGATCAAAGAGGTATTGAGCAATAAAGATGGAGCATACCCTAAATTAGTGATCCAGAATTATGCAG AGAAGCTCTTAGGGGATGGGCTTGTATTGTCCCAAGGTAAAAAATGGCTTAAGATGCGTAAACTAGCGATCCACGCGTTTCATGCAGAGAGCTTGAAAGG GACGATTCCAGCAATGATCGTGAGTGTAGAGACAATGCTTGACAGATGGAGACGGGAGGGAATAAAGGAAATTGAGGTCTTCCAAGAATTCAAGGTCTTA ACATCAGAGATTATTTCCAGGGCTGCTTTCAGAAGCAGTTATCTGGAAGGGAAAAACATCTTTGATATGCTGACCAGAATGGCTCTCATAGTTGGCAGAA ACAACTATAAAGTTGGAATTTCTGGGATTAAAAGATTTTTCAAGACAAGGGATGATATTGAATCAGAGAAACTTGATCGAGGGATACGGGACTCTATGTT AAAGGTTATAAAGAGAAGAGAAGAGGTGATGATGGGTACTGAACCAGATGGTTATGGAAGTGATTTTCTTGGTCTACTTCTAAAGGCTTATCATGAAAAT GATAAGACCAAGAAAATATCAATAGATGATCTGATCGATGAGTGCAAGACTTTTTATGTTGCTGGACATGAAACAACCACAAGCTCACTTACCTGGACGC TTCTCTTTCTAGCAATTCATACAGATTGGCAAAACAGAGCAAGGGAGGAGGTGCTTCAAATATTTGGCCAGCAAAATCCATGTCCTGATAGTATTGGAAG ACTGAAAACTATGACCATGATTGTTAATGAGTCTTTAAGGCTATATCCTCCAGTTTTCAATCTCACGAGAGAAGTCCAAAGGGAAGTCAAACTGGGGAAG CTAATTGTTCCGGCAAAGATGACTCTGAGTTTGTCAGTACTTGCACTTCACAATAATCCACAAATATGGGGGGAAGATGCTCACCTTTTCAAACCAGAAA GATTTGCAGGCGGGGTGGCCGAAGCTACCAAGAATAATGCCACTGCTTTTCTTCCATTCGGCTTGGGACCTCGAAGTTGTGTGGGCTTGAACTTTGCACT TTCAGAAATTAAGATTGCACTCTCTATGATTCTACAGCATTACAGGTTCACTTTGTCACCCACCTATGTCCACTCGCCAGAGCACATTCTAACAATAAGC CCACGATATGGACTTCAAATCCTATTCGAGGCACTGTAA
AA sequence Show only first row Show all	>Potri.010G139300.1 pacid=42798126 polypeptide=Potri.010G139300.1.p locus=Potri.010G139300 ID=Potri.010G139300.1.v4.1 annot-version=v4.1 MEALIIFILSCLCVLFILHLIKFFIKVWWDPIRIQSAMRSQGMKGPPYRFLHGNTKEIYNMRNEIMSSPMELSHQMLARIQPHVYSWIKLYGMNFLNWYG PQAQLVITEPKLIKEVLSNKDGAYPKLVIQNYAEKLLGDGLVLSQGKKWLKMRKLAIHAFHAESLKGTIPAMIVSVETMLDRWRREGIKEIEVFQEFKVL TSEIISRAAFRSSYLEGKNIFDMLTRMALIVGRNNYKVGISGIKRFFKTRDDIESEKLDRGIRDSMLKVIKRREEVMMGTEPDGYGSDFLGLLLKAYHEN DKTKKISIDDLIDECKTFYVAGHETTTSSLTWTLLFLAIHTDWQNRAREEVLQIFGQQNPCPDSIGRLKTMTMIVNESLRLYPPVFNLTREVQREVKLGK LIVPAKMTLSLSVLALHNNPQIWGEDAHLFKPERFAGGVAEATKNNATAFLPFGLGPRSCVGLNFALSEIKIALSMILQHYRFTLSPTYVHSPEHILTIS PRYGLQILFEAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.010G139300 [exp]	0	1
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.008G087800 [exp]	3.87	0.8766
AT2G37260	WRKY	DSL1, ATWRKY44,...	TRANSPARENT TESTA GLABRA 2, DR...		Potri.016G083600 [exp]	4.00	0.8773
AT1G69310	WRKY	ATWRKY57, WRKY5...	WRKY DNA-binding protein 57 (....		Potri.008G094000 [exp]	5.65	0.8827
					Potri.002G159800 [exp]	8.12	0.8646
AT1G24040			Acyl-CoA N-acyltransferases (N...		Potri.010G095800 [exp]	12.12	0.8643
AT3G49055			unknown protein		Potri.015G146100 [exp]	12.16	0.8723
AT1G13480			Protein of unknown function (D...		Potri.010G133500 [exp]	13.74	0.8457
AT4G17870		RCAR11, PYR1	regulatory component of ABA re...		Potri.001G142500 [exp]	14.07	0.8505
AT5G65550			UDP-Glycosyltransferase superf...		Potri.010G182650 [exp]	14.14	0.8300
AT4G24050			NAD(P)-binding Rossmann-fold s...		Potri.003G144100 [exp]	16.12	0.8602

Compare expression of checked genes

Potri.010G139300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.