Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14620 283 / 3e-90 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT2G26710 277 / 1e-87 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT2G46960 262 / 7e-82 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT1G17060 260 / 1e-81 SHK1, CHI2, SOB7, CYP72C1 SUPPRESSOR OF PHYB-4 7, SHRINK 1, CHIBI 2, cytochrome p450 72c1 (.1) AT3G14650 249 / 4e-77 CYP72A11 "cytochrome P450, family 72, subfamily A, polypeptide 11", cytochrome P450, family 72, subfamily A, polypeptide 11 (.1) AT3G14690 243 / 8e-75 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14610 241 / 5e-74 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT4G27710 236 / 8e-72 CYP709B3 "cytochrome P450, family 709, subfamily B, polypeptide 3", cytochrome P450, family 709, subfamily B, polypeptide 3 (.1) AT5G24900 229 / 2e-69 ELA2, CYP714A2 EUI-like p450 A2, cytochrome P450, family 714, subfamily A, polypeptide 2 (.1) AT5G24910 222 / 1e-66 ELA1, CYP714A1 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G139300 [exp] 506 / 3e-177 AT2G26710 372 / 1e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139400 [exp] 452 / 3e-156 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G071200 [exp] 396 / 3e-134 AT2G26710 346 / 9e-114 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.017G000600 [exp] 370 / 9e-126 AT1G17060 166 / 1e-46 SUPPRESSOR OF PHYB-4 7, SHRINK 1, CHIBI 2, cytochrome p450 72c1 (.1) Potri.010G139200 [exp] 336 / 1e-110 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 323 / 2e-105 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.011G098800 [exp] 303 / 9e-98 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.010G139600 [exp] 299 / 3e-96 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.018G070900 [exp] 293 / 4e-94 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036822 [exp] 476 / 4e-164 AT2G26710 410 / 4e-137 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036820 [exp] 462 / 9e-160 AT2G26710 397 / 2e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019184 [exp] 417 / 4e-142 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) Lus10036942 [exp] 429 / 5e-141 AT2G26710 375 / 2e-119 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10028119 [exp] 409 / 2e-135 AT1G30130 368 / 2e-121 unknown protein Lus10004633 [exp] 382 / 1e-128 AT2G26710 378 / 4e-126 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036817 [exp] 396 / 8e-128 AT2G26710 382 / 3e-121 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036816 [exp] 379 / 5e-127 AT3G14620 339 / 8e-111 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Lus10026085 [exp] 378 / 7e-127 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10017775 [exp] 377 / 3e-125 AT3G14630 359 / 2e-117 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.010G139500.2 pacid=42799995 polypeptide=Potri.010G139500.2.p locus=Potri.010G139500 ID=Potri.010G139500.2.v4.1 annot-version=v4.1 ATGGCTGTGGTGGCCGCCATGGGAACCACCATAATCTTCCTTTCAAGTTGCGGATGCCTATACCTTCTTTTGCTTTTCATCAACTTCTTTAACAAAGTGT GGTGGACCCCAATTCGCATACAATCTGCCTTGCATTCACAAGGAGTGAAAGGCCCTTCTTACAGATTCCTTCATGGAAACTTGAAAGAGATCATCAACTT GAGAAAAGAGGCTATGAGCAGTCCCACGGAATTATGCCATCAATCCTTCTCTAGAATTCAACCTCATGTTTATTTATGGAGCAAGCTGCATGGTAAGAAT TTCTTTTGGTGGAAAGGTAGTCAAGCACAATTGGTAGTCTATGAAACAGAACAGATTAAAGTAGTCTTGAATAATAAAGATGGAAATTACCTCAAACCTG AGGTGCAACCTTATTTAAAGAAGCTCTTTGGGGATGGACTTGTGACAACCAGAGGTGAAAAATGGTTTAAGCTGCGCAAAGTGGCCAATCATGCTTTCCA TGGAGAGAGTTTCAAAGATATGATTCCGGAAATGGTTTCGAGCGTGGAGATGATGCTTGGGAGATGGAAAGATCATCGAGGCAAGGAGATTGAAGTATTC CAAGACTTTAAGGTCTTAACATCAGAAATAATTTCCAGGACAGCTTTTGGAAGCAGCTACTTGGAAGGGCAGCAGATATTTGAAATATTGACGAGGATGG TTCTCATTTTCTCCAAAAACCTTTTTAAGATGAGAATTCCTGGAATTGGAAAACTTGTTAAGACACAAGATGATATTCAATCAGAAAAACTTGGCCAACT CATAAGAAACAGTGTCATAAAGATGATAAAGAAAAGAGAGGCGGCAATGGCAGATTGGCAAGAAAAAGTAAGGAATGAGATCCTTGAATTGTTTGGCCAA CAGAATCCAAGTCTAGAAGGCATTTCAAGATTGAAGACTATGAGCATGGTTATCAATGAATCTCTAAGGTTATATCCCCCTGTCGTCGGTCTCCTACGTG AAGTAAAAAAAGGAACAAAATTGGGAAATCTAATCATTCCAGAAAAGATGGAGGTCCATGTTCCCTCTCTAGCTCTCCATCATGACCCTCAAATATGGGG AGATGATGTTCACCTTTTCAAGCCTGATAGATTTGCAGAAGGGGTGGCTAAAGCTACTAAAAATAACATTTCTGCATTCCTGCCATTTGGTATGGGACCT AGAAATTGTGTGGGCATGAACTTTGCATATAATGAAATAAAGATTACACTCTCAATGATTCTGCAGCGGTACAGGATCACCCTATCACCTAATTATGTCC ATTCACCAGTTCTCGTTCTTGCAATATGCCCACAACATGGACTTCAAGTCACGATCAAGGCAGTGTGA
AA sequence Show only first row Show all	>Potri.010G139500.2 pacid=42799995 polypeptide=Potri.010G139500.2.p locus=Potri.010G139500 ID=Potri.010G139500.2.v4.1 annot-version=v4.1 MAVVAAMGTTIIFLSSCGCLYLLLLFINFFNKVWWTPIRIQSALHSQGVKGPSYRFLHGNLKEIINLRKEAMSSPTELCHQSFSRIQPHVYLWSKLHGKN FFWWKGSQAQLVVYETEQIKVVLNNKDGNYLKPEVQPYLKKLFGDGLVTTRGEKWFKLRKVANHAFHGESFKDMIPEMVSSVEMMLGRWKDHRGKEIEVF QDFKVLTSEIISRTAFGSSYLEGQQIFEILTRMVLIFSKNLFKMRIPGIGKLVKTQDDIQSEKLGQLIRNSVIKMIKKREAAMADWQEKVRNEILELFGQ QNPSLEGISRLKTMSMVINESLRLYPPVVGLLREVKKGTKLGNLIIPEKMEVHVPSLALHHDPQIWGDDVHLFKPDRFAEGVAKATKNNISAFLPFGMGP RNCVGMNFAYNEIKITLSMILQRYRITLSPNYVHSPVLVLAICPQHGLQVTIKAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Potri.010G139500 [exp]	0	1
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Potri.001G069799 [exp]	2.64	0.9730
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.002G188900 [exp]	3.87	0.9719
					Potri.013G045500 [exp]	4.89	0.9648
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134475 [exp]	6.32	0.9581
AT3G62700		ATMRP10, ABCC14	ATP-binding cassette C14, mult...		Potri.014G130500 [exp]	7.41	0.9657
AT2G02850		ARPN	plantacyanin (.1)		Potri.002G241500 [exp]	8.83	0.9270
AT4G01630		ATEXP17, ATHEXP...	EXPANSIN 17, expansin A17 (.1)		Potri.002G184700 [exp]	11.48	0.9535
					Potri.003G204450 [exp]	12.72	0.9579
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Potri.007G095000 [exp]	15.87	0.9260
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134400 [exp]	17.14	0.9427

Compare expression of checked genes

Potri.010G139500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.