Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51550 695 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G39000 600 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G28680 576 / 0 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G04690 576 / 0 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT5G38990 550 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 504 / 2e-166 THE1 THESEUS1, protein kinase family protein (.1) AT1G30570 493 / 3e-162 HERK2 hercules receptor kinase 2 (.1) AT4G39110 491 / 5e-161 Malectin/receptor-like protein kinase family protein (.1) AT3G46290 486 / 9e-160 HERK1 hercules receptor kinase 1 (.1) AT2G21480 479 / 1e-156 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G165800 [exp] 1319 / 0 AT3G51550 657 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.016G138700 [exp] 688 / 0 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.006G110000 [exp] 681 / 0 AT3G51550 1256 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G095900 [exp] 657 / 0 AT3G51550 845 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096600 [exp] 651 / 0 AT3G51550 829 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096000 [exp] 647 / 0 AT3G51550 832 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096800 [exp] 646 / 0 AT3G51550 823 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.008G105500 [exp] 615 / 0 AT3G04690 999 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.010G145600 [exp] 592 / 0 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042537 [exp] 529 / 3e-176 AT3G04690 942 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10028140 [exp] 504 / 9e-167 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10042844 [exp] 497 / 9e-164 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10028805 [exp] 484 / 5e-158 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10017478 [exp] 481 / 6e-157 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10039274 [exp] 470 / 2e-153 AT5G24010 997 / 0.0 Protein kinase superfamily protein (.1) Lus10037887 [exp] 470 / 4e-153 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10014185 [exp] 467 / 3e-151 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10022728 [exp] 465 / 3e-151 AT3G51550 1184 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10027509 [exp] 458 / 6e-149 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.010G140000.2 pacid=42796807 polypeptide=Potri.010G139932.1.p locus=Potri.010G140000 ID=Potri.010G140000.2.v4.1 annot-version=v4.1 ATGAAGACCGAAAACAGAAATGAAAACTCGTTGCTTGCTCCAATCACGTTTCTTCCTTTCTTCTTCATAGCCTGTTGCACACTCCCCTCCACTGCTGACA AGCCGTCATATTACATCCCCCCTGACAACCCTGCATTTGATTGTTCTCCGTCAGAATCATCACACGATGCAGGATTCCCTTATAGCAATAGATATGAAAC TGATTATTCATCTGTTTCCAGAGTATATGCCATAGATCCTAGCAACCGTGAAAAACCGAGAATTTCTGCTTGCATCTTCAGGAAGCAGTTCTCCTTTCCA TTCATTGTCTCTGATGGCCCCAAGTTCCTTCGACTTTACTTCAAACCAGTCACATATTCAGGGTTAGACGTATCTAAGGCCTTGTTCTCCATCAGCGTTG GTCCGTATACACTAATAACTACTTCAGAGTCATCCTATTCTAAATATTTCCCAAATAGTGATTATGCTATCAGGGAATTCTGTGTCAACACGGATGGCCA GATATTAAATGTAACTTTCACCCCCTCGTCAAAGGTTTTGGGTGCCTACGCTTTTGTCAACAAGATTGAGGTAGTCTCAATGCCATCAAAGCTTTACATA CAAGAATATGCTCCATTGTCACTTGTAGGAAAGCCTTCTCCTTATTCCATGGGGAATTCTAGAGCCCTCGAGATGATGCACCGGGTGAACATAGGAGGAG ATGTGATCTCTGGTCTAGAAGATACTGGCATGTTTCGTCGCTGGACCTGGGATGGTGATTATTTCAAGAGTAATGATGGAAACACAAGTATTGTTGAATC AGAAGTTGAAGTCAAGTCGAGCTTACTGGTGCCTGCATATGCTGCTCCACTCCAAGTTTATAACTCTGCCAGGACAATTCTACATACAACAGAAAGCAAA TACCGAGCTAGATGGATGTTCCCAGTTGATTATGGTTTCTATTACCTTGTTAGACTCCATTTCTGTGAGATTTCTAGAAAAATTAATGGAGATGGACAAA GAGTTTTCAGCATTTACATCAACAATCAAACTGCTGAGGATCATGCAGATGTTTTCAATTGGAGCCATGGGGCTGGAATTCCCATTTACAGAGACTACGT TGTGAACTTTTCAAGCTACGGTGAAGGCGTAAAGTATCTATCAATTGCATTGGGAAGTACTGATGGATCATCTGCAAAATTTGGTGGTCCAATTCTGAAT GGGCTAGAAATTTTCAAGTTGTCTGACTTTTCTAACAATCTTGCAGGTCCTCATCCATTTGGGGTCATAGTTGCATCTCATCAGCATTTTTCTGTACGAC ATGATGCAGAAAGCTATCATGATGTGGAAATAGTTAGACGGGTAGCCTGTGGTCTTGTGCTTGCTTATTTTGCAATAGCATTTCTAGGCCACTGTTGTTT ATTTTCTTCTCGTTCAAATCGACGGAAAAAATCATCTAAGCAAGATCAATCATTAGGCTATTGCCGAATTTTTACAATTGCTGAGACAAAGTCAGCAACC AATAATTTTGCAGATGGCTTACTCATTGGCACCGGTGGATTTGGGAAGGTCTACAAGGGATCCATTGATGGTGGCATCACAAACGTTGCTATAAAGCGTG CCGATCGAAGTTCACACCAAGGCTTAAAAGAGTTCCAAACTGAAATCTCCATGCTCTCAAAGCTCAGGCACGGCCACCTAGTATCTTTGCTCGGATACTG CACTGAGGAAAAGGAAATGATACTTGTTTACGAGTACATGGCTCAAGGCACGCTACGTGATCATCTCTACAAGACACAGAAACCTCCACTTCCATGGAAG CAGAGGCTTAAGATTTGCATTGGTGCTGCACGAGGGCTGCACTACCTTCACACAGGTGCAAAACATACTATCATCCACCGTGACATCAAGACTACCAACA TCTTGTTGGATGAAAAATGGGTGCCAAAAGTTTCAGATTTCGGATTATCAAAACTTGGCCCAAACAACATGACGGACTCTGAGTCACATGTTTCAACCAT TGTTAAAGGTAGTTTTGGCTATCTGGATCCAGAGTATTATCGACGGCAAAAACTAACTGAAAAATCTGATGTGTACTCATTCGGGGTGGTGTTGTTTGAG GTTCTATGTGCTAGGCCTGCTGTGATCCCCATGGGAGAAATTGGGGAAGATGAGCCCGAGAAAGTGAGTTTAGCTGAGTGGGCATTACATTGCTGCCAAA TGGGGACCCTTGATCAGATAATTGATCCATATCTAAAAGGTGAGATAGCTCCCGACTGCTTCAAGACATTCGCAGGCATAGCAAGGAAATGTTTGGAAGA TAGGGGAAGTGAAAGGCCAACAATGGGCGACGTATTATGGAACTTGGAGCTCGCAATGCAGCAACAGGAAGGTGTTGGCCGGCAAGAGGCTAATGGGACA ATGAATGGTGATTTGCGCATAATGATCGACAACCAACGCTGCAGTGGCTTCGATATTTCAGATCCAAACCCAGGGGTGGAGTTTTCTGATATTATGGTTC CGACCGGACGTTGA
AA sequence Show only first row Show all	>Potri.010G140000.2 pacid=42796807 polypeptide=Potri.010G139932.1.p locus=Potri.010G140000 ID=Potri.010G140000.2.v4.1 annot-version=v4.1 MKTENRNENSLLAPITFLPFFFIACCTLPSTADKPSYYIPPDNPAFDCSPSESSHDAGFPYSNRYETDYSSVSRVYAIDPSNREKPRISACIFRKQFSFP FIVSDGPKFLRLYFKPVTYSGLDVSKALFSISVGPYTLITTSESSYSKYFPNSDYAIREFCVNTDGQILNVTFTPSSKVLGAYAFVNKIEVVSMPSKLYI QEYAPLSLVGKPSPYSMGNSRALEMMHRVNIGGDVISGLEDTGMFRRWTWDGDYFKSNDGNTSIVESEVEVKSSLLVPAYAAPLQVYNSARTILHTTESK YRARWMFPVDYGFYYLVRLHFCEISRKINGDGQRVFSIYINNQTAEDHADVFNWSHGAGIPIYRDYVVNFSSYGEGVKYLSIALGSTDGSSAKFGGPILN GLEIFKLSDFSNNLAGPHPFGVIVASHQHFSVRHDAESYHDVEIVRRVACGLVLAYFAIAFLGHCCLFSSRSNRRKKSSKQDQSLGYCRIFTIAETKSAT NNFADGLLIGTGGFGKVYKGSIDGGITNVAIKRADRSSHQGLKEFQTEISMLSKLRHGHLVSLLGYCTEEKEMILVYEYMAQGTLRDHLYKTQKPPLPWK QRLKICIGAARGLHYLHTGAKHTIIHRDIKTTNILLDEKWVPKVSDFGLSKLGPNNMTDSESHVSTIVKGSFGYLDPEYYRRQKLTEKSDVYSFGVVLFE VLCARPAVIPMGEIGEDEPEKVSLAEWALHCCQMGTLDQIIDPYLKGEIAPDCFKTFAGIARKCLEDRGSERPTMGDVLWNLELAMQQQEGVGRQEANGT MNGDLRIMIDNQRCSGFDISDPNPGVEFSDIMVPTGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.010G140000 [exp]	0	1
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Potri.008G101000 [exp]	6.70	0.9787	Pt-GAS1.1
					Potri.002G146901 [exp]	7.34	0.9693
AT4G11650		ATOSM34	osmotin 34 (.1)		Potri.001G107800 [exp]	7.74	0.9722	Pt-OLP.5
					Potri.001G248708 [exp]	7.93	0.9753
AT1G66920			Protein kinase superfamily pro...		Potri.012G002800 [exp]	10.00	0.9810
AT4G11650		ATOSM34	osmotin 34 (.1)		Potri.001G107950 [exp]	10.95	0.9747
AT5G48100		LAC15, TT10, AT...	TRANSPARENT TESTA 10, LACCASE-...		Potri.005G200600 [exp]	12.40	0.9737
AT4G02830			unknown protein		Potri.002G053700 [exp]	12.68	0.9675
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Potri.005G098200 [exp]	15.55	0.9684
AT2G15680		AtCML30	calmodulin-like 30, Calcium-bi...		Potri.009G102500 [exp]	17.86	0.9667

Compare expression of checked genes

Potri.010G140000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.