Plant FIBer expression Database

Potri.010G140100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G69070 820 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019174
[exp]
905 / 0 AT1G69070 845 / 0.0 unknown protein
Lus10036815
[exp]
882 / 0 AT1G69070 841 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04147 Nop14 Nop14-like family
Representative CDS sequence
>Potri.010G140100.3 pacid=42797249 polypeptide=Potri.010G140100.3.p locus=Potri.010G140100 ID=Potri.010G140100.3.v4.1 annot-version=v4.1
ATGGCAAAGACATCAAAAAGAAGCAGAAGCAGCAGCAGCAGCAATACAAAATCCAAGAAGAAGAAGAAGAACAGCAGGACAGCCCCAAATTCCGTTGCCA
TGAAAGCGAGCGCTGCATCCAAAGACAACAAAAACAGCAGCAACCCTTTTGAGACAATTTGGTCCCGCCGCAAATTCGACATCCTCGGAAAGAAACGCAA
AGGCGAAGAGCTTCGTATTGGGCTCTCCCGGTGCCGCGCCATTGAAAAGAGGAAGAAGACTTTGTTAAAAGAGTATGAAGAGAGCGGCAAGTCTTCTGTC
TTCTTGGACAAGAGAATTGGAGAACAAAATGAACAGCTTGGAGAATTTGATAAAGCTATCATCCGCTCCCAGCGCGAGCGTCAGTTGAAAAACAAGAAGA
GCAAGTATAATTTATCAGATGGAGAAGAAGATGATGATTTTGCAATTCCGAATCTTGGTCCACTTTCGGGACAAGATGATTTCGAGGATGAAATCTTGTC
TGATGATGATGGAGATGATGCTGATGCAGATAGAACAAGTAAGAAACCAGCCATCTTAAGGCAACTTAATGCTCATGGCTTGCCGCAGGATGCAGTGGAC
GGGGAGGAAAATAAACCCAAAACTAAGAAGGAAGTAATGCAGGAGGTTATTCTGAAGAGCAAGTTTTTCAAGGCTCAAAAAGCTAAAGATAAGGAAGAAA
ATGAACAATTGATGGAAGAATTGGATAAAAGCTTCACATCTTTGGTGCAGTCTCAAGCCTTGTCTTCTTTGACAGAACCAGGCAAGATGAATGCCTTGAA
GGCCCTTGTCAATAAGGACATTCCTAATGAGCATGTAAAGAAGGATGGGTTACCAGTTATTCAAAAACCTGAAACTTTCAAGCAGCAGGAACAACCTGAT
TCTTATGACAAACTCGTTTACGAGATGGCGATAGATTCACGTGCACGGCCATCGGACAGGACAAAGACACCGGAAGAAATTGCCCAGAAGGAGAGAGAAC
GACTAGAGCAACTAGAGGAGGATCGTAAGAAACGCATGCTTGTTGCTGATGACTCCAGTGACGAAGAGAATGATGATGTTGAGAAGCTGTCAGCTCAGAG
GCCAAGGTCAATATCTGGTGATGATCTTGGTGATTCCTTTTCTCTTTATGAAGAGCCTGGGACTACAAAGGGCTGGGTTGATGAGATTCTTGCAAGAAAG
GAGGCAGATGACTCTGACAATGAAGATGATGATTCTTCTGAGGAGTCTGCGAGCGCCAATGATGATGGTGATGATGAAGGATCTGATGAAGATGATACTG
ATGGTGATGATGATGAACATGAGAAGTCTACATCTTTGAAGGATTGGGAGCAGAGTGATGATGACAATCTTGGCACAGATTTGGAAGAGGATGAAGAACA
TGGTTCTCATGATGGTGATGATGGAGAAATAGAGCCAATAAGCCACAAAAAGTCAAAGAAAACTGAACCTGTTGAGCCTAGGAAAGGAGATGAAAAATCT
CTGGATGGAAAGAAAAAAAAAGCAAATCGTGAACAGCATTCAACCCAACCAGACATTCCGCATATAATTGAAGCCCCGAAGAGCTTTGAAGAATTTTGTG
CAATATTGGAGAATTGTTCCAATGAAAATGTTATTCTGGTAGTTGATCGAATTCGGAAAAGCAATGCAATACAGCTTGCAGCAGAAAATCGGAAGAAAAT
TCAAGTATTTTATGGTGTGCTATTACAGTATTTTGCTGTCTTAGCAAATAAAAAGCCCTTGAATATTGAGTTATTGAATTTTCTGGTCAAGCCACTGATG
GAGATGAGTGTGGAGATTCCATACTTTTCTGCAATATGTGCTCGTCAGCGAATCTTACGAACTCGTGCACAATTTTGTGAGGCTCTAAAGAATACAGCAG
AGAATAGTTGCTGGCCTTCTATGAAAACGCTCTCTCTCTTGAGGTTGTGGTCCATGATCTTTCCTTGCTCTGACTTTCGGCATGTTGTCATGACCCCAGT
AATACTGTTGATGTCTGAATATCTGATGCGCTGTCCCATCTTGTCGGGGCGTGATATTGCAATTGGTTCTTTCTTATGTACCATGGTTCTCTCTATCACT
AAACAATCTCAGAAGTTCTGTCCTGAAGCCATAATGTTTCTCCGAACTTTGCTGATGGCAACTACAGAAAGAAAACCATCTTCTTATCAGGAATCTCAGT
TTTATCATCATATGGAACTAAAAGAAATCAAGCCCTTGCTGCATATTCATGATCACGTAAATGAGATTCGTCCTCTGAATTTCCTCATGGTAATGGACAT
GCAAGAGGACACTTCATTTTTCAGCTCAGATGATTTCAGGGTTGGTGTGCTGGTTACTATGGTAGAAACTCTTCAAGGGTTTGTTGACATTTATAAAGAG
TTGAGTTCCTTTCCTGAAATTTTCTTGCCTATTTCAATGTTGTTGCTTGAGGTAGCACAACAGGAAAACATGCCAGCAACGTTACAAGATAAATTCAAAG
ATGTTGCCGAACTTATTAATAAGAAGGCCAACAAACATCATATGATGCGGAAACCCCTACAAATGCAGAAAAAGAAGCCAGTTCCCATCAAATTAGTTGC
TCCAAAATTTGAGGAGAATTTTGTGAAGGGTAGAGATTATGACCCAGACCGTGAACGGGCTGAAAGGAGAAAGTTAAAGAAACTCGTAAAACGAGAAGCT
AAAGGGGCAGCTCGTGAACTGCGGAAGGACAATTCTTTCATATTTGAGGTGAAGGAAAAAGACAAGGCACTGCTGGAGGATGAAAGAGCAGAGAATTATG
GAAAGGCGAGGGCTTTCCTCCAAGAACAAGAACACGCTTTCAAATCTGGGCAATTAGGAAAAGGAAAAGGGAGGAAGAGAAGAAGATGA
AA sequence
>Potri.010G140100.3 pacid=42797249 polypeptide=Potri.010G140100.3.p locus=Potri.010G140100 ID=Potri.010G140100.3.v4.1 annot-version=v4.1
MAKTSKRSRSSSSSNTKSKKKKKNSRTAPNSVAMKASAASKDNKNSSNPFETIWSRRKFDILGKKRKGEELRIGLSRCRAIEKRKKTLLKEYEESGKSSV
FLDKRIGEQNEQLGEFDKAIIRSQRERQLKNKKSKYNLSDGEEDDDFAIPNLGPLSGQDDFEDEILSDDDGDDADADRTSKKPAILRQLNAHGLPQDAVD
GEENKPKTKKEVMQEVILKSKFFKAQKAKDKEENEQLMEELDKSFTSLVQSQALSSLTEPGKMNALKALVNKDIPNEHVKKDGLPVIQKPETFKQQEQPD
SYDKLVYEMAIDSRARPSDRTKTPEEIAQKERERLEQLEEDRKKRMLVADDSSDEENDDVEKLSAQRPRSISGDDLGDSFSLYEEPGTTKGWVDEILARK
EADDSDNEDDDSSEESASANDDGDDEGSDEDDTDGDDDEHEKSTSLKDWEQSDDDNLGTDLEEDEEHGSHDGDDGEIEPISHKKSKKTEPVEPRKGDEKS
LDGKKKKANREQHSTQPDIPHIIEAPKSFEEFCAILENCSNENVILVVDRIRKSNAIQLAAENRKKIQVFYGVLLQYFAVLANKKPLNIELLNFLVKPLM
EMSVEIPYFSAICARQRILRTRAQFCEALKNTAENSCWPSMKTLSLLRLWSMIFPCSDFRHVVMTPVILLMSEYLMRCPILSGRDIAIGSFLCTMVLSIT
KQSQKFCPEAIMFLRTLLMATTERKPSSYQESQFYHHMELKEIKPLLHIHDHVNEIRPLNFLMVMDMQEDTSFFSSDDFRVGVLVTMVETLQGFVDIYKE
LSSFPEIFLPISMLLLEVAQQENMPATLQDKFKDVAELINKKANKHHMMRKPLQMQKKKPVPIKLVAPKFEENFVKGRDYDPDRERAERRKLKKLVKREA
KGAARELRKDNSFIFEVKEKDKALLEDERAENYGKARAFLQEQEHAFKSGQLGKGKGRKRRR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G69070 unknown protein Potri.010G140100
[exp]
0 1
AT3G16840 P-loop containing nucleoside t... Potri.010G063600
[exp]
2.00 0.8308
AT1G31970 STRS1 STRESS RESPONSE SUPPRESSOR 1, ... Potri.003G098800
[exp]
3.74 0.8287
AT3G56990 EDA7 embryo sac development arrest ... Potri.016G037400
[exp]
4.24 0.8005
AT1G03530 ATNAF1 nuclear assembly factor 1 (.1) Potri.013G145300
[exp]
4.89 0.8272
AT1G60620 ATRPAC43 RNA polymerase I subunit 43 (.... Potri.001G369500
[exp]
4.89 0.8151 Pt-ATRPAC42.1
AT4G01560 MEE49 maternal effect embryo arrest ... Potri.014G108400
[exp]
5.29 0.8153
AT3G55340 PHIP1 phragmoplastin interacting pro... Potri.010G209701
[exp]
7.07 0.8182
AT1G50920 Nucleolar GTP-binding protein ... Potri.009G054000
[exp]
10.24 0.7567
AT5G58370 P-loop containing nucleoside t... Potri.019G128000
[exp]
11.18 0.7233
AT5G66540 unknown protein Potri.015G078500
[exp]
15.29 0.7452

Potri.010G140100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.