Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38895 129 / 5e-37 RING/U-box superfamily protein (.1.2.3) AT5G15790 110 / 8e-30 RING/U-box superfamily protein (.1.2) AT3G02290 103 / 3e-27 RING/U-box superfamily protein (.1.2) AT5G41350 101 / 2e-26 RING/U-box superfamily protein (.1) AT4G00335 84 / 6e-20 RHB1A RING-H2 finger B1A (.1.2.3) AT4G23450 78 / 6e-18 AIRP1, AtAIRP1 ABA Insensitive RING Protein 1, RING/U-box superfamily protein (.1.2.3) AT4G14220 66 / 2e-12 RHF1A RING-H2 group F1A (.1) AT5G22000 58 / 7e-10 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) AT5G37270 53 / 2e-08 RING/U-box superfamily protein (.1) AT5G37250 51 / 7e-08 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100100 [exp] 118 / 3e-32 AT5G15790 230 / 6e-76 RING/U-box superfamily protein (.1.2) Potri.004G114800 [exp] 115 / 9e-32 AT5G15790 246 / 6e-83 RING/U-box superfamily protein (.1.2) Potri.003G161600 [exp] 104 / 2e-27 AT5G15790 167 / 2e-51 RING/U-box superfamily protein (.1.2) Potri.001G068700 [exp] 96 / 6e-24 AT5G38895 161 / 1e-49 RING/U-box superfamily protein (.1.2.3) Potri.003G129900 [exp] 91 / 4e-22 AT5G41350 146 / 6e-44 RING/U-box superfamily protein (.1) Potri.001G101700 [exp] 89 / 1e-21 AT5G41350 142 / 2e-42 RING/U-box superfamily protein (.1) Potri.014G087000 [exp] 82 / 6e-19 AT4G00335 222 / 2e-73 RING-H2 finger B1A (.1.2.3) Potri.002G161500 [exp] 69 / 6e-14 AT4G00335 159 / 8e-49 RING-H2 finger B1A (.1.2.3) Potri.010G243200 [exp] 66 / 2e-13 AT5G06490 138 / 2e-41 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005084 [exp] 99 / 2e-25 AT5G38895 224 / 8e-75 RING/U-box superfamily protein (.1.2.3) Lus10032270 [exp] 99 / 3e-25 AT5G41350 192 / 2e-61 RING/U-box superfamily protein (.1) Lus10024635 [exp] 91 / 1e-22 AT5G41350 178 / 7e-57 RING/U-box superfamily protein (.1) Lus10034367 [exp] 91 / 6e-22 AT5G38895 215 / 2e-70 RING/U-box superfamily protein (.1.2.3) Lus10017788 [exp] 86 / 1e-20 AT4G00335 204 / 3e-67 RING-H2 finger B1A (.1.2.3) Lus10004636 [exp] 74 / 1e-16 AT5G41350 74 / 3e-17 RING/U-box superfamily protein (.1) Lus10029351 [exp] 64 / 6e-12 AT5G22000 270 / 7e-89 RING-H2 group F2A (.1.2.3) Lus10016195 [exp] 64 / 9e-12 AT5G22000 276 / 2e-91 RING-H2 group F2A (.1.2.3) Lus10010513 [exp] 63 / 2e-11 AT4G14220 236 / 3e-74 RING-H2 group F1A (.1) Lus10034049 [exp] 63 / 2e-11 AT4G14220 228 / 2e-71 RING-H2 group F1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.010G140300.2 pacid=42799345 polypeptide=Potri.010G140300.2.p locus=Potri.010G140300 ID=Potri.010G140300.2.v4.1 annot-version=v4.1 ATGATTAATAATTATCAGATCACTACCCTTCAACTATATAACCACAACAGAAAGGAAATTCGGAGCTGGATAATGGTTTCTCTTTGTTGTTGCTTTCATA ATGATGACCCAGGAGGGAATGTCAACAGTTCCCACAGGGGCTTCATGTACACATTATTCAACAAGTACGCAGCAGTATTCAGCAACGAGGAAACTCCTGC CCTCCCTGCACACAACAGAGGGCCACCAACCCCTTCAGTGGAATCCAATGCAGCAGTTTTTAATATTACACAATCCGAAACTAGCATGATTGCTCCAGGA ATCTTGCCATTCGAAGCCAATCCCGGACCCTCCAATACCGCAGGCCAAACACACCAAGATACAGAACGAGCAGTGCAAGGTAAAGACTGTATTGCCCTAG AATTTGTGCCCGAAGAAGGTAAATCAAATGAAAACAATCCAAAGGCCCCAATTAGCGTCTCAAAAGAAAAGGCAGAACCTGGAGATCGTTACCTTCATGC ATCCATAGACGAGGAGGATGTTTGTCCCACGTGCCTAGAAGAGTACAGTGTTGAAAATCCAAGGATAGTCACGCAATGTAACCACCATTACCACCTTAGT TGTATATACGAGTGGATGGAGAGAAGCCAAACCTGTCCTGTTTGTAGCAAGGTGATGATATTTGATGAAACAAGTTGA
AA sequence Show only first row Show all	>Potri.010G140300.2 pacid=42799345 polypeptide=Potri.010G140300.2.p locus=Potri.010G140300 ID=Potri.010G140300.2.v4.1 annot-version=v4.1 MINNYQITTLQLYNHNRKEIRSWIMVSLCCCFHNDDPGGNVNSSHRGFMYTLFNKYAAVFSNEETPALPAHNRGPPTPSVESNAAVFNITQSETSMIAPG ILPFEANPGPSNTAGQTHQDTERAVQGKDCIALEFVPEEGKSNENNPKAPISVSKEKAEPGDRYLHASIDEEDVCPTCLEEYSVENPRIVTQCNHHYHLS CIYEWMERSQTCPVCSKVMIFDETS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38895			RING/U-box superfamily protein...		Potri.010G140300 [exp]	0	1
AT3G47180			RING/U-box superfamily protein...		Potri.005G180300 [exp]	1.41	0.9150
AT3G19660			unknown protein		Potri.004G105900 [exp]	2.44	0.8983
AT3G50120			Plant protein of unknown funct...		Potri.003G159400 [exp]	3.46	0.9094
					Potri.012G021500 [exp]	3.87	0.9018
					Potri.011G069800 [exp]	4.12	0.8374
AT4G05430			Carbohydrate-binding X8 domain...		Potri.007G111000 [exp]	4.89	0.9092
AT5G14510			ARM repeat superfamily protein...		Potri.001G344200 [exp]	6.63	0.9021
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G030900 [exp]	7.48	0.8864
AT5G24620			Pathogenesis-related thaumatin...		Potri.012G004800 [exp]	7.74	0.8191
AT4G38670			Pathogenesis-related thaumatin...		Potri.009G132200 [exp]	7.74	0.8423

Compare expression of checked genes

Potri.010G140300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.