Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58650 235 / 3e-65 unknown protein AT5G26910 211 / 6e-58 unknown protein AT3G05750 184 / 7e-48 unknown protein AT1G67040 66 / 9e-11 unknown protein AT3G53540 52 / 2e-06 unknown protein AT1G74160 47 / 9e-05 unknown protein AT1G18620 44 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G108600 [exp] 1427 / 0 AT3G58650 234 / 6e-65 unknown protein Potri.T171201 [exp] 1420 / 0 AT3G58650 235 / 3e-65 unknown protein Potri.005G019700 [exp] 553 / 0 AT5G26910 417 / 4e-132 unknown protein Potri.013G010500 [exp] 508 / 5e-166 AT5G26910 371 / 6e-115 unknown protein Potri.017G116000 [exp] 90 / 5e-18 AT1G67040 317 / 3e-94 unknown protein Potri.004G098300 [exp] 89 / 1e-17 AT1G67040 339 / 2e-102 unknown protein Potri.006G213700 [exp] 47 / 0.0001 AT3G53540 433 / 1e-136 unknown protein Potri.012G061900 [exp] 46 / 0.0001 AT1G74160 730 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037725 [exp] 796 / 0 AT5G26910 276 / 4e-80 unknown protein Lus10016854 [exp] 253 / 1e-74 AT3G58650 134 / 2e-33 unknown protein Lus10029857 [exp] 226 / 6e-62 AT3G58650 345 / 2e-105 unknown protein Lus10020689 [exp] 216 / 2e-58 AT5G26910 350 / 2e-107 unknown protein Lus10017607 [exp] 77 / 3e-14 AT1G67040 179 / 7e-47 unknown protein Lus10033565 [exp] 66 / 1e-10 AT1G67040 236 / 3e-66 unknown protein Lus10027403 [exp] 47 / 5e-05 AT5G62170 84 / 4e-18 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14309 [poplar] [flax] DUF4378 Domain of unknown function (DUF4378)
Representative CDS sequence Show only first row Show all	>Potri.010G140900.1 pacid=42797886 polypeptide=Potri.010G140900.1.p locus=Potri.010G140900 ID=Potri.010G140900.1.v4.1 annot-version=v4.1 ATGCTGAAGAGGGATCGATCTTTTGGTATTGAGAAAATGGGAATTGAGAAAGAAGGTTCCAAAAGTGGAGGGGGATACGTAGGTGGTTTCTTTCAGCTGT TTGATTGGACTGCAAAATCTAGGAAAAAGTTGTTCTCAAGCAAGTCAGATTTACAAGAGCTTTCAAAACAAGGAAAGAGAAATGGTGGGAGCTTGCGAAT GACTCGGCTTCGTCTGATGGATGATGATGATACTGGAGCAGGATCGAGTATTAGAGGAGGCAGTGATTATAGTTGTGCTTCGTCAGTAACAGATGATGAA GGATATGGGGCTAGGGCCCCTGGGGTGGTAGCCAGGCTTATGGGATTAGACTCCATGCCAACATCTAATTTCCTGGAGCCCAATTCTACCCCTTTTTTTG ACACCCAATCCCTTAGAGATGCCTCTCGTGGCAAGAGAAATTTCGATTACTATCATGACCATCAAATCACTTACTCGGGAAATCTGCTTAACAAGGAGGA TGGCCCTCCTAGAAATTTGGTGAAGTCCAAGCCTCAGAAGGTCCTGAGCAGGCCTATTGAAAAGTTTCAAACGGAAATCTTGCCTCCTAAATCGGCTAAA TCAATTCCAACTACCCACCATAAACTTTTATCTCCAATCAAGAGTCCTGGCTTCATTCCGAGCAAAACTGCTGCTCACATAATGGAAGCAGCTGCAAAAA TTATTGAACCTAGTCCCCTAGCAGTAGCCAAAGCCAAAATGCCTGCTCTTGGTTCTTCGTCATTACCACTGAAAGTTCGGGATCTTAAGGAAAAACTGGA GGTTGCTCAGAAAATGCCTCTGGTAGGGTCCTCTTCAGCAGCCATAAGAACTCGAGAAGCGAAAGAGAAAGTAGAAGCTTCTCATAAAACCTCGAGACTT GCAGAAACTTCTCGAAGACCAGTTGAGTCGAGTGCTGCCAAGCATCTAAAGGGGCAGTCTTTGAACAAAAGCTGGAATGGATCAGATGATACATCTTACA GGGCTTTTTCTGAGACTGATGAAGACTCTTCTAGCTCAAAGACTAAGGTAAAGTCTATCTCACTTGCAATCCAAGCAAAGTTCAATGTTCAGAGAAGAGA AGGTTTGAATGCAAGTAGTAGTCAAGGCTTTGTAGGCCAGAAAGAACAGGCCGAGGTTTCATCAAGTCAGCCCTTCAAGAGCCACCCAAATTTCCAAAAG AGTTCGCAAAAAAGATCTCCTATACTTAAAGCTTCTGGTGCTCTTAGGCAGAATAATCAGAAACAAAATTGTATGATGGATAAAGACAAATTGCCTTCAA AGCCCTTGGTTTCCAACTTGCAGGGTAAAAAGGTACTGTCTGGGAATCCTCCAGCAAGGCACAAAACTTTTTGTAAGACTTTTGGTTCCAAAAATGGATC CAGGAAGTTGGCCTCAGATTCGAGAGAAGTTGAGAAGGGGACTTCTAACTATAGTACAAGGAGTAATCCAAGGAAGAAGCGATCGATTGATGGGAATTTG CATCTTGAGAAAAACCAGGTTGCTGATAAATTGCTGATTGACAGAAATCGGAAGGCTGTTGAAACTAATCCAGTTATTGATAGGCACTTTAGTTGGGTAG AAGAAAGCAAAAGGAAAGGCATGGATGTTGTTTCATTCACATTCACAGCCCCCTTGACACGGTCTATGCCTGGTTCTGAAACACCTACTCGGGTTGTACA GGAAAAAAGTGGTTCTTGTACGGATAATCGCAGCAAGAGATTGTTGCTTGACACAGATAGTATGAATCTATCTTCAGGGGGATATAATGTGATAGGGGGG GATGCTTTGAGTACTCTTTTGGAACAAAAAATGAGGGAATTGACCAAAACTGTCGAGTCTTCTAGTTCCCTATCCACGTTTAGTTCAGGCGGCACTGCAC CAAGGTTACATGATAACAAGGATGAAAGTGTCTCATGCATAGATAGATCGGATAGCTGCTATGATTGTCACTTTCTCTCCACAGATCCTGCAGCTCTCAG ATTGAAACGCATTCTTCAGGGAGTTGATGAGATGGACTGTAGCAGCAAGTCAAATGATTCCAGAAAGTTCCTTGATTGTAGACGTCCTAGTCCAGTCTCT GTTCTTGAACATTCTTTTTCAACTGAAAGTAGCAGCTCTTTAGACAGCGCGGATAGTTGCATTACAGAAGGGAGCAGGCATTGTTCATCCATTCAAGTCC AGGAAGTCCATGGTTTGAGCTCTTCAAAGAAGTTCCATTTTGTGGATGTTGATACGGAGTTATCAGATTCTGCTTCTTCATCATCAACAGGAACTGTGGA TAGAAAACATGCAAATATGTTAGCAGTGACAGGTCTTGCGAGATCAACCAAGTGGGAAATAGAATATGTGAAGAAGATTCTCTGTAATATTGAATTGATG TTTCAGGACTTCGCATTAGGTCGGGCTTCCAAGATCATAAACCCTCACCTCTTCCATCAGTTGGAAAGGAGAAAAGATATGTTTGAAAGTGATGGTGTTG ATGCTAGGCTAGAGCGGAAAGTATTATTTGATTGTGCAAGTGAATGCTTGGACTTGAGATGCAGACGTTATGCTGGTGGTGGATACAAGGCGTGGGTGAA AGGGACAACAATGGTGAGAAGAAAGGAATGGTTAGGGGAAGACGTGTGCAAGGAGATCTTGGAATGGAGCAGCATGGGGGATTGCATGGTGGATGAGCTT GTAGACAAGGACATGAGCAGTCAGTATGGAAGATGGCTGGACTTTGAAATAGATGCATTTGCATTTGGAGTAGAGGTCGAAAGCCAGATATTTAATTCAT TGGTTAATGAGGTTGTTGCTGATATCTTGCTGTTTTGA
AA sequence Show only first row Show all	>Potri.010G140900.1 pacid=42797886 polypeptide=Potri.010G140900.1.p locus=Potri.010G140900 ID=Potri.010G140900.1.v4.1 annot-version=v4.1 MLKRDRSFGIEKMGIEKEGSKSGGGYVGGFFQLFDWTAKSRKKLFSSKSDLQELSKQGKRNGGSLRMTRLRLMDDDDTGAGSSIRGGSDYSCASSVTDDE GYGARAPGVVARLMGLDSMPTSNFLEPNSTPFFDTQSLRDASRGKRNFDYYHDHQITYSGNLLNKEDGPPRNLVKSKPQKVLSRPIEKFQTEILPPKSAK SIPTTHHKLLSPIKSPGFIPSKTAAHIMEAAAKIIEPSPLAVAKAKMPALGSSSLPLKVRDLKEKLEVAQKMPLVGSSSAAIRTREAKEKVEASHKTSRL AETSRRPVESSAAKHLKGQSLNKSWNGSDDTSYRAFSETDEDSSSSKTKVKSISLAIQAKFNVQRREGLNASSSQGFVGQKEQAEVSSSQPFKSHPNFQK SSQKRSPILKASGALRQNNQKQNCMMDKDKLPSKPLVSNLQGKKVLSGNPPARHKTFCKTFGSKNGSRKLASDSREVEKGTSNYSTRSNPRKKRSIDGNL HLEKNQVADKLLIDRNRKAVETNPVIDRHFSWVEESKRKGMDVVSFTFTAPLTRSMPGSETPTRVVQEKSGSCTDNRSKRLLLDTDSMNLSSGGYNVIGG DALSTLLEQKMRELTKTVESSSSLSTFSSGGTAPRLHDNKDESVSCIDRSDSCYDCHFLSTDPAALRLKRILQGVDEMDCSSKSNDSRKFLDCRRPSPVS VLEHSFSTESSSSLDSADSCITEGSRHCSSIQVQEVHGLSSSKKFHFVDVDTELSDSASSSSTGTVDRKHANMLAVTGLARSTKWEIEYVKKILCNIELM FQDFALGRASKIINPHLFHQLERRKDMFESDGVDARLERKVLFDCASECLDLRCRRYAGGGYKAWVKGTTMVRRKEWLGEDVCKEILEWSSMGDCMVDEL VDKDMSSQYGRWLDFEIDAFAFGVEVESQIFNSLVNEVVADILLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58650			unknown protein		Potri.010G140900 [exp]	0	1
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Potri.019G128500 [exp]	2.23	0.8734
AT3G52770		ZPR3	LITTLE ZIPPER 3, protein bindi...		Potri.006G083201 [exp]	3.16	0.8424
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.003G034300 [exp]	3.46	0.8033	Pt-ATB.2
AT1G77110		PIN6	PIN-FORMED 6, Auxin efflux car...		Potri.005G187500 [exp]	10.24	0.8326	PIN4,Pt-PIN6.2
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.001G302600 [exp]	13.07	0.7837
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Potri.007G132900 [exp]	18.00	0.7424
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Potri.005G076800 [exp]	22.95	0.7905
AT1G75560			zinc knuckle (CCHC-type) famil...		Potri.005G234700 [exp]	23.36	0.7636
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Potri.008G140200 [exp]	24.49	0.7833
AT3G26400		EIF4B1	eukaryotic translation initiat...		Potri.002G198700 [exp]	24.73	0.8358

Compare expression of checked genes

Potri.010G140900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.