Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16144 697 / 0 AMSH3 associated molecule with the SH3 domain of STAM 3 (.1) AT1G48790 455 / 2e-156 AMSH1 associated molecule with the SH3 domain of STAM 1 (.1) AT1G10600 258 / 1e-83 AMSH2 associated molecule with the SH3 domain of STAM 2 (.1.2.3) AT5G23540 44 / 0.0002 Mov34/MPN/PAD-1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G045800 [exp] 454 / 5e-156 AT1G48790 581 / 0.0 associated molecule with the SH3 domain of STAM 1 (.1) Potri.010G041200 [exp] 214 / 8e-67 AT1G10600 256 / 3e-87 associated molecule with the SH3 domain of STAM 2 (.1.2.3) Potri.002G127900 [exp] 44 / 0.0001 AT5G23540 567 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Potri.014G032900 [exp] 44 / 0.0001 AT5G23540 563 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036454 [exp] 709 / 0 AT4G16144 645 / 0.0 associated molecule with the SH3 domain of STAM 3 (.1) Lus10009006 [exp] 446 / 2e-152 AT1G48790 589 / 0.0 associated molecule with the SH3 domain of STAM 1 (.1) Lus10009634 [exp] 379 / 3e-126 AT1G48790 536 / 0.0 associated molecule with the SH3 domain of STAM 1 (.1) Lus10030875 [exp] 254 / 9e-82 AT1G10600 311 / 2e-108 associated molecule with the SH3 domain of STAM 2 (.1.2.3) Lus10030613 [exp] 218 / 1e-67 AT1G10600 253 / 5e-85 associated molecule with the SH3 domain of STAM 2 (.1.2.3) Lus10031085 [exp] 47 / 2e-05 AT5G23540 599 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10035470 [exp] 45 / 6e-05 AT5G23540 601 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10021746 [exp] 44 / 0.0003 AT5G23540 618 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10042663 [exp] 44 / 0.0003 AT5G23540 616 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [poplar] [flax] JAB PF01398 [poplar] [flax] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease CL0366 [poplar] [flax] PF08969 [poplar] [flax] USP8_dimer USP8 dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.010G141100.1 pacid=42799416 polypeptide=Potri.010G141100.1.p locus=Potri.010G141100 ID=Potri.010G141100.1.v4.1 annot-version=v4.1 ATGAAGATCAACGTCGATAAAATGACTCGAAAAGTCGAAGTCGATAATCGGATTCCTCTGCGTAATTACTACAGAATCGCTGATAATCTCCTCCGTCAGG CAAATATACACAGAGAAGAGAAGAATGTAGTAGATTTGTACATAATGCTACTTAGATACTTAAGTTTGGTTTCTGAAACTATACCTTATCATCGAGATTA CCAAGCTTTGTATCAAAAAGAAAGAGCAAACTACAAGAAAAGATCATTTGCGGTGTTAAGTGAGCTTGAATCAATTAAGCCTGAATTCCATAGGCGAGTG GATGAGATAGAAAAAGCTTATTCAAGAACACAACAAGTCGAATTTAATGGTTCAGGAACATCTACTTTGGAATGGCCACCTGCTAATAAAAATTCTTACT CGAGCAAGCTTGTTGTTGTCGCGCCACAGTCATCGTGGAAGTATGATAATAATCATACTCAAGGGTTGTATTTAGACATGTCGCGAATTGACAAGCAGTT GCAGAAGTTGTCTGTTAGTTTACCTTTACCAAAGCAAGAGACTTTATCAAGGCACTCGTTTTTAGGCCCAAATGGTTTCCGGGGCCAATGGTCAGGACCG AGTGCAGAGATAAAGGTTCAGTACCCTAGCAATGCTGACTTAACCTCTACTGAAAATTCAAGCCTGAATCAAGCTGGACAATATGATGCTATGGCAGTAA AAGATGCCAATTCTGCGGCTGTTGAATCTACAATGGAATCAGTTCTATCCTTAGATGATGGTAGATGGCCACGTCTGGCTGAGGACACATGCCCAACATT AATTAATGAAGCAAGGGAGGATCCTTTTCAGTTTGTTGGCATCAGGCAACCCTCCCCTCCTCCCGTTCTTGCTAAAGTGCAGCAGGAATCTACCCCGATT CCTTCATCTAAAGTTGCTGATCCAAGACCTGGACCAGCAAAACCTTCTGATGATGGATTGCCAAGCTCTAATTCCTATCAACATTTACATGTTCCTGTAA ATTTGATGGAAGACTTCTTGAGATTGGCTCGGGCAAATACAGAGAAAAATTTAGAAACATGTGGTGTTCTTGCTGGTTCACTGAAAAACAAGGTTTTTCA CATTACTACGCTTATAATCCCAAAGCAAGAGTCAACTTCAGATTCGTGCCAGACATTAAATGAAGAAGAAATATTTGAAGTTCAAGACAAACTATCACTT TTTCCCCTTGGATGGATTCATACACATCCATCACAGACTTGTTTCATGTCTTCAGTTGATCTGCACACTCACTACTCGTATCAGATCATGTTGCCTGAAG CAATTGCAATTGTTATGGCCCCGACAGATGAATCAAGTCCACATGGAATTTTTCATCTATCTGATCCAAGTGGTGTGTCAGTGATTCGTAATTGCCAGCA GAGAGGGTTTCATCCCCATGAGGAGTCTTTGGATGGGAGCCCGATTTATGAGCACTGTTCTCATGTTTACATGAATTCCATTATGAAGTTTGATGTTGTT GATCTTCGGTAA
AA sequence Show only first row Show all	>Potri.010G141100.1 pacid=42799416 polypeptide=Potri.010G141100.1.p locus=Potri.010G141100 ID=Potri.010G141100.1.v4.1 annot-version=v4.1 MKINVDKMTRKVEVDNRIPLRNYYRIADNLLRQANIHREEKNVVDLYIMLLRYLSLVSETIPYHRDYQALYQKERANYKKRSFAVLSELESIKPEFHRRV DEIEKAYSRTQQVEFNGSGTSTLEWPPANKNSYSSKLVVVAPQSSWKYDNNHTQGLYLDMSRIDKQLQKLSVSLPLPKQETLSRHSFLGPNGFRGQWSGP SAEIKVQYPSNADLTSTENSSLNQAGQYDAMAVKDANSAAVESTMESVLSLDDGRWPRLAEDTCPTLINEAREDPFQFVGIRQPSPPPVLAKVQQESTPI PSSKVADPRPGPAKPSDDGLPSSNSYQHLHVPVNLMEDFLRLARANTEKNLETCGVLAGSLKNKVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDKLSL FPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDESSPHGIFHLSDPSGVSVIRNCQQRGFHPHEESLDGSPIYEHCSHVYMNSIMKFDVV DLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16144		AMSH3	associated molecule with the S...		Potri.010G141100 [exp]	0	1
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Potri.006G217600 [exp]	2.23	0.8003
AT4G36720		HVA22K	HVA22-like protein K (.1)		Potri.007G029300 [exp]	5.38	0.6278
AT4G35860		ATGB2, AtRABB1b...	GTP-binding 2 (.1.2)		Potri.009G159600 [exp]	6.92	0.6926	Pt-ATGB2.1
AT3G54360			zinc ion binding (.1)		Potri.001G036400 [exp]	6.92	0.7651
					Potri.004G034301 [exp]	7.00	0.6907
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Potri.017G081500 [exp]	8.48	0.6757
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G263500 [exp]	9.64	0.7466	CIPK25.1
AT2G33700			Protein phosphatase 2C family ...		Potri.002G007500 [exp]	15.16	0.6318
AT4G29160		SNF7.1	SNF7 family protein (.1.2.3)		Potri.018G069900 [exp]	18.16	0.6834
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Potri.010G194300 [exp]	21.02	0.6186	Pt-SYP81.2

Compare expression of checked genes

Potri.010G141100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.