Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16910 123 / 2e-32 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) AT1G66120 98 / 2e-23 AMP-dependent synthetase and ligase family protein (.1) AT1G65890 97 / 4e-23 AAE12 acyl activating enzyme 12 (.1) AT1G20560 97 / 5e-23 AAE1 acyl activating enzyme 1 (.1.2) AT1G65880 96 / 1e-22 BZO1 benzoyloxyglucosinolate 1 (.1) AT1G68270 91 / 7e-21 AMP-dependent synthetase and ligase family protein (.1) AT1G75960 85 / 5e-19 AMP-dependent synthetase and ligase family protein (.1) AT5G16340 84 / 1e-18 AMP-dependent synthetase and ligase family protein (.1) AT5G16370 84 / 1e-18 AAE5 acyl activating enzyme 5 (.1) AT2G17650 82 / 4e-18 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G108000 [exp] 129 / 1e-34 AT3G16910 904 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Potri.002G010600 [exp] 96 / 2e-22 AT1G20560 823 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G250700 [exp] 93 / 8e-22 AT1G20560 790 / 0.0 acyl activating enzyme 1 (.1.2) Potri.006G036300 [exp] 91 / 8e-21 AT1G66120 687 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G138350 [exp] 90 / 1e-20 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.004G082000 [exp] 90 / 2e-20 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.006G036200 [exp] 90 / 2e-20 AT1G66120 668 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.016G034800 [exp] 90 / 2e-20 AT1G66120 692 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G138451 [exp] 87 / 9e-20 AT1G65880 730 / 0.0 benzoyloxyglucosinolate 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037734 [exp] 133 / 6e-36 AT3G16910 897 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016869 [exp] 133 / 7e-36 AT3G16910 902 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037735 [exp] 132 / 2e-35 AT3G16910 909 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016870 [exp] 131 / 2e-35 AT3G16910 918 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016011 [exp] 90 / 2e-20 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10012266 [exp] 89 / 2e-20 AT5G16370 733 / 0.0 acyl activating enzyme 5 (.1) Lus10007369 [exp] 88 / 7e-20 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10020787 [exp] 87 / 1e-19 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1) Lus10010956 [exp] 84 / 2e-18 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1) Lus10013773 [exp] 80 / 1e-17 AT5G16370 422 / 1e-146 acyl activating enzyme 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Potri.010G141501.1 pacid=42797748 polypeptide=Potri.010G141501.1.p locus=Potri.010G141501 ID=Potri.010G141501.1.v4.1 annot-version=v4.1 ATGCCCTTGACAGGTAACAGCGAAGGCAATCTTTTCAGCCATAGCAAATGCTGGTGTCAGTCACTTCCGTGCTGCACCTGTGATACTTATACCATAATCA ATGCTTCCAAGGAGGAGACTACCCTTCCTCTGCCCCGTTTGGTGCATGTAATGACAGCTGGCGCTGCCCCTCCCCCTTCTGTACCCTTCGCCATGTCAGA AAAAGATCATGAAACCCGTCCCCGCAGATGGAAAAACCAAGGGAGAAATTGTGATGAGAGGCAATTTAGTGATGAAGGGCTCTACTTAAAGAACCCAAAA GCCACCAAGGAAGCTTTTGCAGATGGATGGTTTCATTCCAGGGATCTTGGTGCAAAGAACCCCGATGGATATGTAGAAATTAAGGACAGATCAAAGGACA TCATCATCTATGGAGGTGAGAACATAAGTAGCTTGGAGGTGGAAAATGTATTGTATCGGTGGTGCCTCGGCCAGATGAGAGCTGGGGCGAGTCACCTTGC GCAGATGCCTGCTTACCGGGTTTCAAAATCTCGTGTTTGGACCCCTGCCAAAAACAGCGACAGGGAAGATTCGGAAGCATCTCCTCAGGGCCAAGGCAAA AGAGATGGGACGTATCAAGGCGAGCAAGTTATAGCTGGTGACAAGGCTTTTCTGGCTGTTGAACAATTCGTGCTATAG
AA sequence Show only first row Show all	>Potri.010G141501.1 pacid=42797748 polypeptide=Potri.010G141501.1.p locus=Potri.010G141501 ID=Potri.010G141501.1.v4.1 annot-version=v4.1 MPLTGNSEGNLFSHSKCWCQSLPCCTCDTYTIINASKEETTLPLPRLVHVMTAGAAPPPSVPFAMSEKDHETRPRRWKNQGRNCDERQFSDEGLYLKNPK ATKEAFADGWFHSRDLGAKNPDGYVEIKDRSKDIIIYGGENISSLEVENVLYRWCLGQMRAGASHLAQMPAYRVSKSRVWTPAKNSDREDSEASPQGQGK RDGTYQGEQVIAGDKAFLAVEQFVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Potri.010G141501 [exp]	0	1
AT3G01930			Major facilitator superfamily ...		Potri.017G064201 [exp]	4.24	0.8567
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Potri.007G012700 [exp]	7.74	0.8449
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Potri.004G159000 [exp]	8.71	0.8359
AT4G15733		SCRL11	SCR-like 11 (.1)		Potri.004G201100 [exp]	15.62	0.6975
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Potri.004G172100 [exp]	22.44	0.7625
AT5G54010			UDP-Glycosyltransferase superf...		Potri.017G041900 [exp]	22.44	0.8130
AT5G05800			unknown protein		Potri.001G299100 [exp]	24.61	0.8160
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Potri.011G059101 [exp]	30.24	0.7937
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Potri.014G075901 [exp]	38.98	0.7469
					Potri.018G089150 [exp]	43.58	0.7344

Compare expression of checked genes

Potri.010G141501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.